Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1170 ATGGACCATTTTCAACCCAATACTTCTCTCCATCTCAGTCTAGCTAACACTGAAGTCAACCTAGAACTTGTCCTTGAGCATTCTTCTTCTTCATCCTCATCCCCTTTAAGTCCAGCTGAGCCTCGAGTCTTCTCCTGCAACTACTGCCAGAGGAAGTTCTACAGCTCACAAGCCCTTGGAGGACACCAGAATGCTCACAAGCTTGAGAGGACTTTGGCCAAGAAAAGCCGAGAGCTAAGCTCAGCTGTGAGGCCTCATGGAGGGCCAAACCAACGATCCAACGCCAGTGGTACCGGCCTTTTTCGACGTACTCAACAACCCGTTGTGGGGTTTGAGCATCAAGGACATGCTGGTAGGTTTCAGAATGATATGAGCTATGGCGCCAGGATAGAGATGAACTATGATTCTAGACCTGAGAATGTCCAGGAGGAGTTCAGCCATCTTGACTTGTCTCTAAGGCTTTGA 465 0.4882 MDHFQPNTSLHLSLANTEVNLELVLEHSSSSSSSPLSPAEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAVRPHGGPNQRSNASGTGLFRRTQQPVVGFEHQGHAGRFQNDMSYGARIEMNYDSRPENVQEEFSHLDLSLRL* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1170 154 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vvi11g1170 154 FunFam Zinc finger protein 2 22 90 - -
Vvi11g1170 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vvi11g1170 154 MobiDBLite consensus disorder prediction 75 100 - -
Vvi11g1170 154 Gene3D Classic Zinc Finger 19 95 - -
Vvi11g1170 154 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 95 IPR044246 GO:0009788
Vvi11g1170 154 MobiDBLite consensus disorder prediction 86 100 - -
Vvi11g1170 154 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1170 Vvi-Chr11 18868891 18869355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1170 1 154 C2H2 Transcription Factor Family AT5G57520 50.920 4.40e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi11g1170 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1170 - - vvi:100249581 308.531