Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1169 ATGGAGGCCACACAGGAGTTCATTTACCGATCGAAACTTCCCGACATCAACATCCCGAGTCATCTCCCATTACATTCGTATTGCTTCCAGCACATATCCAAATTCAGCTCCAATCCATGCCTCATCAACGCCGGCAATGGCAACATCTACACTTACGCTGATGTCCATCTCACCGCACGTAAAGTGGCTGCCGGCCTTAACAGGCTAGGCATCCGACAAGGTGATGCTATCATGCTTTTACTCCAAAACTGCCCGGAATTTGTCTTCTCATTTCTCGGCGCCTCTTATCTCGGTGCAACTAGCACGACGGCGAACCCCTTTTACACGCCGGCCGAGATTGAGAAGCAAGCCACTGCATCAAGCGCTAGAATTATAATCACTCAAGCTTGTTTTGCCGAGAAAGTGAAGAAATTCGCTGAAGAAAACGATGTGAAAATCATCTGCATTGACGAGCCGGTGGCGGGTTGTTTGCATTTTTCGGAGTTGTCACAGGCCGACGAGAATGACATCCCGGATGTTAACATCAGCCCCGACGATGTTGTCGCGCTGCCTTATTCATCCGGGACGGTGGGGCTTCCAAAAGGGGTGATGCTAACTCACAAAAGCATGATCACCAGTGTCGCTCAGCAGGTCGATGGCGAAAACCCTAATCTGTATTTCCACCTGGACGATGTGATTTTATGCGTGTTACCCATGTTTCACATATATTCCCTGAGCTCAGTTGTGCTTTGTGGCCTTAGAGTTGGGGCTGCAATTCTGATTATGCAGAAGTTTGAGATAAACACACTCATGGAACTTGTTCAGAAACATAAGGTGACTATTGCACCATTTGTTCCTCCAATTCTCTTGGCTATCGCAAAGAGCCCGGTCGCTCACCAGTATGATCTTTCGTCGATTCGGACTGTGATCTCCGGTGCCGCTCCGATGGGGAAGGAGCTTGAAGACAGCCTTGGGTCAAAGCTGCCCAATGCCGTAATTGGACAGGGGTATGGGATGACTGAAGCTGGACCTGTACTATCGATGTGCTTAGCATTTGCAAAGGAACCATTTGAGATAAAATCAGGGGCTTGTGGGACTGTGGTTAGAAATGCAGAGATGAAGATCATCAACCCTGAGACTGGTGCTTCTCTTCCTCCAAATCAAGCAGGAGAGATTTGCATAAGAGGTGACCAAATCATGAAAGGTTATCTTAATGATATTGAGGCCACTAAAGAAGCCATAGACGAAGAAAAATGGCTACACACAGGTGATATCGGATACATAGATGATAATGATGAGCTCTTCATTGTCGATCGATTGAAGGAGATAATTAAAAATAGAGGATTTCAAGTGGCTCCAGCTGAACTTGAAGCAATCTTGATTGCTCATCCTAATATTGTTGATGCTGCGGTTGTACCGATGAAAGATGAAGCTGCGGGAGAGGTTCCAATTGCATTCATTGTGAGATCAAATGGTTTTGAAATCACCGAGGATGAAATAAAGGAATACATCGCAAAACAAGTTGTATATTATAAGAGAATTAAAAGGGTTTTCTTCATTGAGACAATTCCTAAGGCTCCATCTGGTAAAATCCTCAGAAAAGACCTCAAAGCAAAGCTGGCCGCTGGCTTTTCCAATTAA 1620 0.4568 MEATQEFIYRSKLPDINIPSHLPLHSYCFQHISKFSSNPCLINAGNGNIYTYADVHLTARKVAAGLNRLGIRQGDAIMLLLQNCPEFVFSFLGASYLGATSTTANPFYTPAEIEKQATASSARIIITQACFAEKVKKFAEENDVKIICIDEPVAGCLHFSELSQADENDIPDVNISPDDVVALPYSSGTVGLPKGVMLTHKSMITSVAQQVDGENPNLYFHLDDVILCVLPMFHIYSLSSVVLCGLRVGAAILIMQKFEINTLMELVQKHKVTIAPFVPPILLAIAKSPVAHQYDLSSIRTVISGAAPMGKELEDSLGSKLPNAVIGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIINPETGASLPPNQAGEICIRGDQIMKGYLNDIEATKEAIDEEKWLHTGDIGYIDDNDELFIVDRLKEIIKNRGFQVAPAELEAILIAHPNIVDAAVVPMKDEAAGEVPIAFIVRSNGFEITEDEIKEYIAKQVVYYKRIKRVFFIETIPKAPSGKILRKDLKAKLAAGFSN* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1169 539 CDD 4CL 18 529 - -
Vvi11g1169 539 Gene3D - 2 433 IPR042099 -
Vvi11g1169 539 FunFam 4-coumarate--CoA ligase 2 435 536 - -
Vvi11g1169 539 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Vvi11g1169 539 SUPERFAMILY Acetyl-CoA synthetase-like 9 535 - -
Vvi11g1169 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 531 - -
Vvi11g1169 539 Pfam AMP-binding enzyme 32 439 IPR000873 -
Vvi11g1169 539 Gene3D - 434 535 IPR045851 -
Vvi11g1169 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 10 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1169 Vvi-Chr11 18842884 18848126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1169 6 501 Monolignol Biosynthesis Gene Families AT1G51680 67.460 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1169 K01904 - vvi:100265063 1068.14