Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1168 ATGGAGGTCAAGAAAGAGGAGCAGCCGCAGCAGCAGCAGACGGAGATCATTTTCCGGTCGAAACTGCCGGATATTTACATCCCAGATCATCTTCCGCTGCACTCGTATTGCTTTGAGAATATATCGAAGTTCAGCTCAAGGCCTTGTGTGATCGACGGCGCTAACGGAGATATTTATACATACGCGGATGTGGAGCTCACAGCCCGGAGAGTCGGCGCCGGCCTCCACAAGATGGGGATCAAGCAAGGCGAAGTGATAATGCTTCTGCTGCAGAATTGTACCGAGTTCGTGTTCGCATTTCTGGGGGCTTCATATATCGGTGCAACAAGCACGACGGCGAATCCGTTTTACATGCCGGCCGAGATCGAGAAGCAGGCGAAAGCATCAAAGTGTAGGCTGATAATCACCCAGGCTTGCTACTCCGAGAAAGCGATGAGTTTCGCAGAGGAAAACGACGTGAAGGTCATGTGCATCGACACCCCACCGGAGGGTTGCCTGCACTTCTCGGAGCTGACGAACGCCGACGAGGCCGACCTCCCCACCGTGAAAATCAACCCGGACGATGTCGTCGCGCTTCCGTACTCATCCGGCACCACCGGGCTCCCGAAAGGAGTGATGCTGACCCACAGGGGGCAGGTCACCAGCGTGGCCCAGCAAGTCGACGGCGACAACCCCAACCTGTATTTCCACAGTGAGGACGTCATCCTCTGCGTGTTGCCATTGTTCCACGTCTACTCTCTGAACTCAGTTCTGCTCTGCGGATTGAGAGTTGGTGCAGCAATTCTGATTATGCAGAAGTTTGAGATAATCAAATTGCTGGAGCTTATTAATAAGTATAAGGTCACAATTGCACCGTTCGTCCCGCCGATCGTGTTGGCGATTGCGAAGAGTCCGGTGGTGGATGAGTACGACCTTTCCTCCATCAGAACTGTCATGTCCGGTGCTGCTCCCATGGGTAAAGAGCTTGAAGACACTGTCAGAGCCAAGCTCCCTAACGCCAAGCTTGGACAGGGCTACGGGATGACAGAGGCGGGACCCGTGTTGGCAATGTGCTTGGCCTTTGCCAAAGAGCCATTCGAGATCAAGTCTGGGTCTTGTGGCACAGTGGTCAGAAATGCTCAAATGAAGATCCTCGATCCCGATACCGGTGCCTCTCTTCCCCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATGGCTGCACACAGGTGACATCGGATATATTGATGATGATGATGAGCTTTTCATTGTTGATAGGCTAAAAGAGTTGATCAAATATAAGGGATTTCAAGTCGCACCTGCTGAGCTTGAAGCAATGTTAATTGCACATCCCAATGTTTCTGATGCCGCTGTTGTTTCGATGAAAGATGAGGCCGCTGGGGAGGTTCCTGTTGCATTCATTGTGAGATCGAATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCTAAAGCTCCATCGGGTAAAATCCTGCGAAAAGACTTGAGAGCAAGGCTGGCCGTTGGTGTTCCGAATTAA 1647 0.5076 MEVKKEEQPQQQQTEIIFRSKLPDIYIPDHLPLHSYCFENISKFSSRPCVIDGANGDIYTYADVELTARRVGAGLHKMGIKQGEVIMLLLQNCTEFVFAFLGASYIGATSTTANPFYMPAEIEKQAKASKCRLIITQACYSEKAMSFAEENDVKVMCIDTPPEGCLHFSELTNADEADLPTVKINPDDVVALPYSSGTTGLPKGVMLTHRGQVTSVAQQVDGDNPNLYFHSEDVILCVLPLFHVYSLNSVLLCGLRVGAAILIMQKFEIIKLLELINKYKVTIAPFVPPIVLAIAKSPVVDEYDLSSIRTVMSGAAPMGKELEDTVRAKLPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGSCGTVVRNAQMKILDPDTGASLPRNQPGEICIRGHQIMKGYLNDPEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNVSDAAVVSMKDEAAGEVPVAFIVRSNGSKITEDEIKQYISKQVVFYKRIYRVFFVETIPKAPSGKILRKDLRARLAVGVPN* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1168 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 19 443 - -
Vvi11g1168 548 Pfam AMP-binding enzyme 39 448 IPR000873 -
Vvi11g1168 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 540 - -
Vvi11g1168 548 CDD 4CL 27 538 - -
Vvi11g1168 548 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vvi11g1168 548 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Vvi11g1168 548 Gene3D - 443 544 IPR045851 -
Vvi11g1168 548 SUPERFAMILY Acetyl-CoA synthetase-like 7 542 - -
Vvi11g1168 548 Gene3D - 8 442 IPR042099 -
Vvi11g1168 548 FunFam 4-coumarate--CoA ligase 2 444 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1168 Vvi-Chr11 18816825 18820080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1168 6 510 Monolignol Biosynthesis Gene Families AT1G51680 69.981 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1168 K01904 - vvi:100254698 1079.32