Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1158 ATGGAGTACTACTGTGTGATCTTCCTCTCAATAACTGTATTCTGTAACTTTCTCAGTCTGTCATCCGGCAATCAAACTAACAACAGTTCCTCCATGACATTGTATGGCATCGGAGTTGTTCTTGATATGGGATCTTCGCTTGGAAGGATGGCAAATAACTGTATTTCCATGGCCGTCTCTGATTTTTACTCTATAAATAGACATTACCAAACAAGGCTGGTTCTGCACACCAGGGATTCCATGGGAGAGCCTCTCTATGCTTTGTCTTCAGCTATTGATCTTTTAGAAAATAAAAATGTCCATGCAATACTGGGGCCACAAACATCTGAAGAGGCCGAGTTTCTGGTTGATCTAGGAGACAAAGCTAGAGTGCCCATTGTTACCTTTTCCGTGACCACCCCCTTTCTTTCTCAGGAGAAAACTCCGTACTTTGTCCGTGTAGCAATCAATGATAATGCTCAGGTAAAAGCTATAGCTGCCATTGTTCAAGCATTCAGATGGAGGCAGGTGACTCTCATACATGAAGATTCGAATTATGGAAATGGTATCATAGCATATCTAATTGGAGCCTTTGAGGAGATTGATTCACATGTCCCCTATAGGAGTGTCATTTCCCTGAGAGATACTGATGACCAGATCACTATAGAGCTCCAAAAACTGATGACAATGTCCACCAGGGTATTTGTTGTGCACATGTCCTGTTCCCTTGCTTCGCGACTTTTCTTAAAAGCGAAGGAATTGGGGATGATAAGTAAAGGGTATGCCTGGATTATAACTGATGGGATAACGAGTTTCTTGAATTCAATGGATGCATCAGTCATTGACTCAATGCAAGGGTTAGTAGGCCTAAATCCTTATATTCCACCTTCAGAAGAGCTTAACAACTTCACTGTGAAATGGCAAAACAAGTTTCCCAATGACAATCAAAGCGGTAAATTGAATGAATTAAATGTGTTTTGTTTGTGGGCGTACGATGCTGTTTGGGCTCTAGCAAGAGCATATGAAGAAATCGGTCCCAGAATGTCCCAACCTCAGAAATTGAAATCTTGGAGTAAGTTTACAAACCTGGCTTCCATTTCAGTATCACAAACTGGTTCAAAGATTCTCAAAGCCATTTTGCAGAGTCAATTTAATGGTTTGAGTGGCAAGTTTCAGCTTAAGGATGGACAGTTGGAACCAGTGGCATTCCAACTAGTAAATGTAGTTGGAAATGGGGTCAAGGGAATTGGATTTTGGACACCAAAACATGGAATTTCACGAGAAGTTAACCTGTCAGATAGCCAGCTCTATTCAACATCTGCGAACAGTCTTCAACCTACCATCTGGCCTGGACTATCTGCTGTTACCCCAAAAGGTTGGACAATGCCAGTGAGTGGAAAGAAATTGAGAATTGGAGTTCCAGTGAAAGGTGGTTTTACTGAATTAGTGAAGGTGGATCGCAATCTGCAAACTGGTTCAGTTTCTGTATCTGGCTTCTGCATAGATGTGTTCAAGGCTGCAGTTGAAAATTTACCTTATGCATTAACTTATGAGTTCATCCCCTTTGCTGATTCTAATGGAAGCAGTGCAGGAACCTACAATGACCTTGTATTCCAAGTCTATCTCCAGGTTTTTGATGCAGTGGTGGGGGACGTTACAATCACAGCAAACCGATCTTTGTATGTGGACTTTACTTTGCCTTATACAGAGTTAGGTGTGGGCATGGTGGTGCCTATTGAGATTGGAAAAGCCAAGAACATGTGGATCTTTTTGGAGCCTTTGACAGTGGACCTTTGGCTTGTTAGTGGTGCTTTTTTCATTTTGACAGGGTGTATTGTTTGGTTCATAGAACGCAAAATCAATGATGAGTTTAAGGGCTCAAGGGCTCAACAAGTTGGAATGATACTCTGGTATTCATTCTCAACCCTGGTATTTTCACAAAGGGAAAAGTTGATAAGCAACTTGTCCAAGTGTGTGGTGATTGTATGGCTATTTGCTGTACTCATACTAACTTCAAGTTACACTGCAAGTTTGAGTTCAATGCTAACCGTCAATCGACTTCAAATGCTTCGGAAAGGGAGTTTTATAGGTTATCAATATGGATCGTTAATTGGAGAAATACTTAATAATTTGAATTTTGCAAATTCCTCGCTTGAAACATATGGATCTATTGAAGGCTATGCTCATGCCCTAATAGAAGGGAGTAAAAAGGGTGGAGTTTCTGCTATCATTGATGAGATACCTTACATTAAGCTCTTTCTTGCACAATATGGTGACCAGTACACCATGATGGAACCTGAATATCTTACCACCAATGGATTTGGATTTGTAAGTGCATACCTTCCTCAAGAACTTCTTTGTAATATTTCTTTATATGCTTCTATTCTCTGA 2370 0.4068 MEYYCVIFLSITVFCNFLSLSSGNQTNNSSSMTLYGIGVVLDMGSSLGRMANNCISMAVSDFYSINRHYQTRLVLHTRDSMGEPLYALSSAIDLLENKNVHAILGPQTSEEAEFLVDLGDKARVPIVTFSVTTPFLSQEKTPYFVRVAINDNAQVKAIAAIVQAFRWRQVTLIHEDSNYGNGIIAYLIGAFEEIDSHVPYRSVISLRDTDDQITIELQKLMTMSTRVFVVHMSCSLASRLFLKAKELGMISKGYAWIITDGITSFLNSMDASVIDSMQGLVGLNPYIPPSEELNNFTVKWQNKFPNDNQSGKLNELNVFCLWAYDAVWALARAYEEIGPRMSQPQKLKSWSKFTNLASISVSQTGSKILKAILQSQFNGLSGKFQLKDGQLEPVAFQLVNVVGNGVKGIGFWTPKHGISREVNLSDSQLYSTSANSLQPTIWPGLSAVTPKGWTMPVSGKKLRIGVPVKGGFTELVKVDRNLQTGSVSVSGFCIDVFKAAVENLPYALTYEFIPFADSNGSSAGTYNDLVFQVYLQVFDAVVGDVTITANRSLYVDFTLPYTELGVGMVVPIEIGKAKNMWIFLEPLTVDLWLVSGAFFILTGCIVWFIERKINDEFKGSRAQQVGMILWYSFSTLVFSQREKLISNLSKCVVIVWLFAVLILTSSYTASLSSMLTVNRLQMLRKGSFIGYQYGSLIGEILNNLNFANSSLETYGSIEGYAHALIEGSKKGGVSAIIDEIPYIKLFLAQYGDQYTMMEPEYLTTNGFGFVSAYLPQELLCNISLYASIL* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1158 789 CDD PBP1_GABAb_receptor_plant 37 420 IPR044440 -
Vvi11g1158 789 Pfam Ligand-gated ion channel 589 681 IPR001320 GO:0015276|GO:0016020
Vvi11g1158 789 Gene3D - 581 710 - -
Vvi11g1158 789 Gene3D - 351 460 - -
Vvi11g1158 789 Gene3D - 152 315 - -
Vvi11g1158 789 Pfam Receptor family ligand binding region 53 403 IPR001828 -
Vvi11g1158 789 Pfam Ligated ion channel L-glutamate- and glycine-binding site 483 570 IPR019594 GO:0004970|GO:0016020
Vvi11g1158 789 SUPERFAMILY Periplasmic binding protein-like I 35 453 IPR028082 -
Vvi11g1158 789 FunFam Glutamate receptor 580 702 - -
Vvi11g1158 789 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 770 IPR015683 -
Vvi11g1158 789 PIRSF IGluLR_plant 2 776 IPR017103 -
Vvi11g1158 789 SUPERFAMILY Periplasmic binding protein-like II 440 770 - -
Vvi11g1158 789 FunFam Glutamate receptor 154 313 - -
Vvi11g1158 789 CDD GluR_Plant 460 770 - -
Vvi11g1158 789 FunFam Glutamate receptor 361 460 - -
Vvi11g1158 789 Gene3D - 461 580 - -
Vvi11g1158 789 SMART GluR_14 461 781 IPR001320 GO:0015276|GO:0016020
Vvi11g1158 789 FunFam Glutamate receptor 461 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1158 Vvi-Chr11 18691959 18697551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1158 21 770 Ion Channels AT2G24720 44.211 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1158 K05387 - vvi:100254684 1259.59