LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g1158	ATGGAGTACTACTGTGTGATCTTCCTCTCAATAACTGTATTCTGTAACTTTCTCAGTCTGTCATCCGGCAATCAAACTAACAACAGTTCCTCCATGACATTGTATGGCATCGGAGTTGTTCTTGATATGGGATCTTCGCTTGGAAGGATGGCAAATAACTGTATTTCCATGGCCGTCTCTGATTTTTACTCTATAAATAGACATTACCAAACAAGGCTGGTTCTGCACACCAGGGATTCCATGGGAGAGCCTCTCTATGCTTTGTCTTCAGCTATTGATCTTTTAGAAAATAAAAATGTCCATGCAATACTGGGGCCACAAACATCTGAAGAGGCCGAGTTTCTGGTTGATCTAGGAGACAAAGCTAGAGTGCCCATTGTTACCTTTTCCGTGACCACCCCCTTTCTTTCTCAGGAGAAAACTCCGTACTTTGTCCGTGTAGCAATCAATGATAATGCTCAGGTAAAAGCTATAGCTGCCATTGTTCAAGCATTCAGATGGAGGCAGGTGACTCTCATACATGAAGATTCGAATTATGGAAATGGTATCATAGCATATCTAATTGGAGCCTTTGAGGAGATTGATTCACATGTCCCCTATAGGAGTGTCATTTCCCTGAGAGATACTGATGACCAGATCACTATAGAGCTCCAAAAACTGATGACAATGTCCACCAGGGTATTTGTTGTGCACATGTCCTGTTCCCTTGCTTCGCGACTTTTCTTAAAAGCGAAGGAATTGGGGATGATAAGTAAAGGGTATGCCTGGATTATAACTGATGGGATAACGAGTTTCTTGAATTCAATGGATGCATCAGTCATTGACTCAATGCAAGGGTTAGTAGGCCTAAATCCTTATATTCCACCTTCAGAAGAGCTTAACAACTTCACTGTGAAATGGCAAAACAAGTTTCCCAATGACAATCAAAGCGGTAAATTGAATGAATTAAATGTGTTTTGTTTGTGGGCGTACGATGCTGTTTGGGCTCTAGCAAGAGCATATGAAGAAATCGGTCCCAGAATGTCCCAACCTCAGAAATTGAAATCTTGGAGTAAGTTTACAAACCTGGCTTCCATTTCAGTATCACAAACTGGTTCAAAGATTCTCAAAGCCATTTTGCAGAGTCAATTTAATGGTTTGAGTGGCAAGTTTCAGCTTAAGGATGGACAGTTGGAACCAGTGGCATTCCAACTAGTAAATGTAGTTGGAAATGGGGTCAAGGGAATTGGATTTTGGACACCAAAACATGGAATTTCACGAGAAGTTAACCTGTCAGATAGCCAGCTCTATTCAACATCTGCGAACAGTCTTCAACCTACCATCTGGCCTGGACTATCTGCTGTTACCCCAAAAGGTTGGACAATGCCAGTGAGTGGAAAGAAATTGAGAATTGGAGTTCCAGTGAAAGGTGGTTTTACTGAATTAGTGAAGGTGGATCGCAATCTGCAAACTGGTTCAGTTTCTGTATCTGGCTTCTGCATAGATGTGTTCAAGGCTGCAGTTGAAAATTTACCTTATGCATTAACTTATGAGTTCATCCCCTTTGCTGATTCTAATGGAAGCAGTGCAGGAACCTACAATGACCTTGTATTCCAAGTCTATCTCCAGGTTTTTGATGCAGTGGTGGGGGACGTTACAATCACAGCAAACCGATCTTTGTATGTGGACTTTACTTTGCCTTATACAGAGTTAGGTGTGGGCATGGTGGTGCCTATTGAGATTGGAAAAGCCAAGAACATGTGGATCTTTTTGGAGCCTTTGACAGTGGACCTTTGGCTTGTTAGTGGTGCTTTTTTCATTTTGACAGGGTGTATTGTTTGGTTCATAGAACGCAAAATCAATGATGAGTTTAAGGGCTCAAGGGCTCAACAAGTTGGAATGATACTCTGGTATTCATTCTCAACCCTGGTATTTTCACAAAGGGAAAAGTTGATAAGCAACTTGTCCAAGTGTGTGGTGATTGTATGGCTATTTGCTGTACTCATACTAACTTCAAGTTACACTGCAAGTTTGAGTTCAATGCTAACCGTCAATCGACTTCAAATGCTTCGGAAAGGGAGTTTTATAGGTTATCAATATGGATCGTTAATTGGAGAAATACTTAATAATTTGAATTTTGCAAATTCCTCGCTTGAAACATATGGATCTATTGAAGGCTATGCTCATGCCCTAATAGAAGGGAGTAAAAAGGGTGGAGTTTCTGCTATCATTGATGAGATACCTTACATTAAGCTCTTTCTTGCACAATATGGTGACCAGTACACCATGATGGAACCTGAATATCTTACCACCAATGGATTTGGATTTGTAAGTGCATACCTTCCTCAAGAACTTCTTTGTAATATTTCTTTATATGCTTCTATTCTCTGA	2370	0.4068	MEYYCVIFLSITVFCNFLSLSSGNQTNNSSSMTLYGIGVVLDMGSSLGRMANNCISMAVSDFYSINRHYQTRLVLHTRDSMGEPLYALSSAIDLLENKNVHAILGPQTSEEAEFLVDLGDKARVPIVTFSVTTPFLSQEKTPYFVRVAINDNAQVKAIAAIVQAFRWRQVTLIHEDSNYGNGIIAYLIGAFEEIDSHVPYRSVISLRDTDDQITIELQKLMTMSTRVFVVHMSCSLASRLFLKAKELGMISKGYAWIITDGITSFLNSMDASVIDSMQGLVGLNPYIPPSEELNNFTVKWQNKFPNDNQSGKLNELNVFCLWAYDAVWALARAYEEIGPRMSQPQKLKSWSKFTNLASISVSQTGSKILKAILQSQFNGLSGKFQLKDGQLEPVAFQLVNVVGNGVKGIGFWTPKHGISREVNLSDSQLYSTSANSLQPTIWPGLSAVTPKGWTMPVSGKKLRIGVPVKGGFTELVKVDRNLQTGSVSVSGFCIDVFKAAVENLPYALTYEFIPFADSNGSSAGTYNDLVFQVYLQVFDAVVGDVTITANRSLYVDFTLPYTELGVGMVVPIEIGKAKNMWIFLEPLTVDLWLVSGAFFILTGCIVWFIERKINDEFKGSRAQQVGMILWYSFSTLVFSQREKLISNLSKCVVIVWLFAVLILTSSYTASLSSMLTVNRLQMLRKGSFIGYQYGSLIGEILNNLNFANSSLETYGSIEGYAHALIEGSKKGGVSAIIDEIPYIKLFLAQYGDQYTMMEPEYLTTNGFGFVSAYLPQELLCNISLYASIL*	790

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g1158	789	CDD	PBP1_GABAb_receptor_plant	37	420	IPR044440	-
	Vvi11g1158	789	Pfam	Ligand-gated ion channel	589	681	IPR001320	GO:0015276\|GO:0016020
	Vvi11g1158	789	Gene3D	-	581	710	-	-
	Vvi11g1158	789	Gene3D	-	351	460	-	-
	Vvi11g1158	789	Gene3D	-	152	315	-	-
	Vvi11g1158	789	Pfam	Receptor family ligand binding region	53	403	IPR001828	-
	Vvi11g1158	789	Pfam	Ligated ion channel L-glutamate- and glycine-binding site	483	570	IPR019594	GO:0004970\|GO:0016020
	Vvi11g1158	789	SUPERFAMILY	Periplasmic binding protein-like I	35	453	IPR028082	-
	Vvi11g1158	789	FunFam	Glutamate receptor	580	702	-	-
	Vvi11g1158	789	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	37	770	IPR015683	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g1158	Vvi-Chr11	18691959	18697551	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g1158	21	770	Ion Channels	AT2G24720	44.211	0.0	671

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g1158	K05387		-	vvi:100254684	1259.59

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