Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1154 ATGATGGTTTATTTTGCTAACTCATTATATACTTTGTCCCCACTTCACTTCAAGGATTCTATTGATCTTTTAGAAAATAAAGATGTCTATGCAATTCTGGGGCCGCAAACGTCTGAAGAGGCCGAGTTTCTGGTTCATCTAGGAGACAAAGCTAGAGTGCCCATAGTTACCTTTTCTGTGACCACTCCCTTCCTTTCTCAGGAGAAAACTCCATACCTTGTCCGTGTAGCAATCAATGATAAAGCTCAGGTAAAAGCTATTGCTGCAATTGTTCAAGCATTCAGATGGAGGCAGGTGACTCTCATACATGAAGATTCGAATTATGGAAATGGAGTCATACCATACCTAATTGGCGCCTTTGAGGAGATTGATTCACGTGTCCCGCATAGAAGTGTCATTTCTCTGAGAGCTACTGATGACCAGATTACTATTGAGCTCCAAAAACTGATGACAATGTCCACCAGAGTATTTGTGGTGCACATGTCTTCCTCCCTTGCTTCGCGATTTTTCTTAAAAGCAAAAGAATTGGGGATGATGAGTAAAGGGTATGCCTGGATTATAACCGATGGGATAACGAGTATCTTGAATTCAATGGATCCGTCAGTCATTGATTCAATGCAAGGGTTAATAGGCCTAAGGCCTTATATTCCACCTTCAGAAGAGCTTAACAATTTCACTGTGAAATTGAAAAACAAATTTCCCAAGGACAATCGAAGCCCTATATTGAATGAATTAAATATATTTTGTTTGTGGGCATACGATGCAGTCTGGGCTCTAGCAAGAGCATCTGAAGAAATCAGCCCCAGAAAGTCCCAACCTGAGAAACTGAAATCTTTGAGTAAGTTTACAAACCTAGCTTCCATTTCAGTATCACAAACTGGCTCAAAGATTCTCAAAGCTGTTTTGCAAAGTAAATTTAATGGTTTGAGTGGCAAGTTTCAGCTTAAGGATGGACAGTTGGAACCAGTGGCATTCCAACTAGTAAATGTAGTTGGAAATGCGGTCAAGGGAATTGGATTTTGGACACCAAAACATGGAATTTCACGAGAACTTAACCTGTCAGATAGCCAGCTCTATTCAACATCTGCGAACGGTCTTCAACCTACCATCTGGCCTGGACTATCTGCTGTTACCCCAAAAGGTTGGACAATGCCAGTGAGTGGAAAGAAATTGAGAATTGGAGTTCCAGTGAAAGATGGTTTTACTGAATTAGTGAAGGTGGATCGCGATCCGCAAACTGGTGCAGTTTCTGTATCTGGCTTCTGCATAGATGTGTTCAAGGCTGCAGTTGAAAATTTACCTTATGCATTAACTTATGAGTTCATCCCCTTTGACAATTCTAATGGAAGCAGTGCACTAACCTACACTGACCTTGTATTCCAAGTCTATCTCCAGGTTTTTGATGCAGTGGTGGGGGACGTTACAATCACATCAAACCGATCTTTGTATGTGGACTTTACTTTGCCTTATACAGAGTTAGGTGTGGGCATGGTGGTGCCTATTGAGATTGGAAAGGCCAAGAACATGTGGATCTTTTTGGAGCCTTTGACAGTGGACCTTTGGCTTGTTAGTGGTGTTTTTTTCATTTTGACAGGGTGTATTGTTTGGTTCATAGAATGCAAAATCAATGATGAGTTTAAGGGTTCAAGGGCTCAACAAGTTGGAATGATATTCTGGTATTCATTCTCAACCCTGGTATTTTCACAAAGGGAAAAGTTGATAAGCAACTTGTCCAAGTTTGTGGTGATTGTATGGCTATTTACTGTGCTCATACTAACTTCAAGTTACACTGCAAGTTTGAGTTCAATGCTAGCTGTCAATCGACTTCAAATGCTTCGGAAAGGGAGTTTTATAGGTTATCAAAAGGGATCATTAGCCAGAGAAGTAGTTAATAATTTAAATTTTGCAAATTCCTCGCTTCAAACATATGGATCTATTGAAGCCTATGCTCATGCCCTAACAGAAGGAAGTAAAAAGGGTGGAGTTTCTGCTATCATTGATGAGATACCTTACATTAAGCTCTTTCTTGCACAATATGGTGACCAGTACACCATGATCGAACACGAATATCTTACCACCAATGGATTTGGCTTTGCTTTTCCAAAAGGGTCCCCTTTGGTCCCTGATATTTCATGGGCAATAGCAAAGCTAAGAGAAGATGGTAAACTTGATATGATACAACAAACTTGGTTTCAAGACCAATCGGTTTTTAAGAAGCAAGAGTCTCCAACAAAACCAAGCATCTTCGACTCCTATAGCTTTCGTGGCCTCTTTCTAGTCACGGGTACCTCTTCAACTCTAGCCTTGATCATATTCTATGTTTTCCTGATCAGGAACAAATTAACCAGTGAAGGACAACCTCAGCTTAGCAATCGGATTACGCAAGAACCTTTATCTAATGATAGTATTAGTATGTCTGCAGCTGCACTAGACATTTCAGACCATCCAACTGATAACAATATCTCAACTGAAGGAGAAGAGAATTTGGGTGACACTAATAATGGAAACCAACCTTCATAA 2520 0.4032 MMVYFANSLYTLSPLHFKDSIDLLENKDVYAILGPQTSEEAEFLVHLGDKARVPIVTFSVTTPFLSQEKTPYLVRVAINDKAQVKAIAAIVQAFRWRQVTLIHEDSNYGNGVIPYLIGAFEEIDSRVPHRSVISLRATDDQITIELQKLMTMSTRVFVVHMSSSLASRFFLKAKELGMMSKGYAWIITDGITSILNSMDPSVIDSMQGLIGLRPYIPPSEELNNFTVKLKNKFPKDNRSPILNELNIFCLWAYDAVWALARASEEISPRKSQPEKLKSLSKFTNLASISVSQTGSKILKAVLQSKFNGLSGKFQLKDGQLEPVAFQLVNVVGNAVKGIGFWTPKHGISRELNLSDSQLYSTSANGLQPTIWPGLSAVTPKGWTMPVSGKKLRIGVPVKDGFTELVKVDRDPQTGAVSVSGFCIDVFKAAVENLPYALTYEFIPFDNSNGSSALTYTDLVFQVYLQVFDAVVGDVTITSNRSLYVDFTLPYTELGVGMVVPIEIGKAKNMWIFLEPLTVDLWLVSGVFFILTGCIVWFIECKINDEFKGSRAQQVGMIFWYSFSTLVFSQREKLISNLSKFVVIVWLFTVLILTSSYTASLSSMLAVNRLQMLRKGSFIGYQKGSLAREVVNNLNFANSSLQTYGSIEAYAHALTEGSKKGGVSAIIDEIPYIKLFLAQYGDQYTMIEHEYLTTNGFGFAFPKGSPLVPDISWAIAKLREDGKLDMIQQTWFQDQSVFKKQESPTKPSIFDSYSFRGLFLVTGTSSTLALIIFYVFLIRNKLTSEGQPQLSNRITQEPLSNDSISMSAAALDISDHPTDNNISTEGEENLGDTNNGNQPS* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1154 839 SUPERFAMILY Periplasmic binding protein-like I 20 382 IPR028082 -
Vvi11g1154 839 Gene3D - 81 240 - -
Vvi11g1154 839 FunFam Glutamate receptor 509 631 - -
Vvi11g1154 839 SMART GluR_14 390 733 IPR001320 GO:0015276|GO:0016020
Vvi11g1154 839 PIRSF IGluLR_plant 16 837 IPR017103 -
Vvi11g1154 839 Gene3D - 510 646 - -
Vvi11g1154 839 CDD PBP1_GABAb_receptor_plant 15 351 IPR044440 -
Vvi11g1154 839 Pfam Bacterial extracellular solute-binding proteins, family 3 418 732 IPR001638 -
Vvi11g1154 839 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 779 IPR015683 -
Vvi11g1154 839 SUPERFAMILY Periplasmic binding protein-like II 369 733 - -
Vvi11g1154 839 Gene3D - 390 509 - -
Vvi11g1154 839 FunFam Glutamate receptor 390 509 - -
Vvi11g1154 839 CDD GluR_Plant 389 731 - -
Vvi11g1154 839 Pfam Ligand-gated ion channel 733 762 IPR001320 GO:0015276|GO:0016020
Vvi11g1154 839 Gene3D - 281 389 - -
Vvi11g1154 839 FunFam Glutamate receptor 79 232 - -
Vvi11g1154 839 Gene3D - 676 738 - -
Vvi11g1154 839 MobiDBLite consensus disorder prediction 805 839 - -
Vvi11g1154 839 Pfam Receptor family ligand binding region 21 332 IPR001828 -
Vvi11g1154 839 FunFam Glutamate receptor 290 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1154 Vvi-Chr11 18634544 18638115 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1154 20 782 Ion Channels AT2G29120 43.299 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1154 K05387 - vvi:100254684 989.949