Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1148 ATGGAGGACCTCATGGACAATGACAAGTTATATTCATCCATTAAGATGACAGAGGCTGATGGGGACTGTTCATTAGTATTTGAACTCCCTGAAAATGATCCTCTCTTTGAGAAAAAGAAGAAAGTACTACAAGCTAAGGGTTTTGATACCAAGGAACGTGTATACTTCAATAGCATCTCATGTTCTAGTTGGACAAATACTACATTGGAAAAAATGCTTAAGAGAGCGAGAATCATTCATTTGGATGAGGTAGAACTTTACTTTGGTGAAGTTCCTGTATCTCCATCTGTAGAATTTTACAGTCACAGGAATGAGCTGGAGGCTCTCAATTCAATCCTCTCCCTCATTGATATCTCTTGCTCAAGTTGTCAACACACGAGAATGGACGTCTTGCAAGAATTATGCAATGCAACTCTTGATAGGATTCAAGAAGTTGGTGACAAGAACAGACTGGAGACTAGAATTGTTGAAGACTTGAGCATTGAAAAAGAGGAGTGTATATTACAGTGGGGTGAAAGAAACGATGTTAGAACAAAGCTGAAGATAGCCTATGTTGAAGGAGCTGGACGAGGTGCTATTGCCACAGAAGACCTTAAAGTTGGAGATGTTGCTTTAGAGATCCCAATGTCCATAGTCATTTCTGAGGAGCTTGTGCATGAATCTGACATGTTTCCTATATTGGAAAAAATTGATGGCATTTCCTCTGAGACGATGTTACTGTTGTGGAGCATGAAGGAGAAGCACAACTCTAATTCAAAATTTAACACCTACTTCAATGCATTACCTGAGGCATTCAATACAGGATTGAGCTTTGAATTTGATGCAATCATGGTTTTAGCTGGAACCTTGCTGTTGGAAGAGATAATTGAAGCGAAAAAGCACTTGAATGCCCAATATGAGGAGTTAGTTCCTGCCCTATGCAAAGATCACCCCGATATATTTCCACCAGAGTTCTACACACAGGAGCAGTTCTTATGGGCTTGTGAGCTCTGGTACTCTAATGGCATGCAGGTTATGTTCACTGATGGAAAATTAAGGACATGTTTGATTCCTATTGCAGGCTTTCTTAATCATTCGCTATATCCCCATATAATGCACTATGGCAAAGTGGATTCTAAGACAAATTCCCTGAAATTCTGTGTGTCCAAACCATGCAACATGGGGGAGCAATGCTATCTTAGCTACGGGAATTTCTCCAGCAGTCATTTAGTTACCTTCTATGGTTTCATACCACAGGGAGACAACCTCTATGATACGATTCCATTGGAGATCGATAATCCTCAGGGTGATTGTCCTGAGGAGTTCCACCCCATGTCTGATTCAGCCACTCACATGGTGCGGGGTACTTGGCTCTCAAACAATCATGAGATCTTCCATTATGGCTTGCCACCCCCTCTCTTAGATCATCTACGGAGTGCTTGGAGTACTGTGCCACCTTTCAAGACCCCTACGCTGGCCAACTTGGAAGTTGAAAAGAAAGTTTTAGGAGACATCCTTTCCACCTATGAAACATTGATGGAATGTATTGATGACACAGAAGAAGATAACCGGAGAAACTCCAGTTGGGATGTGAAGCTAGCCATGGAGTATAAGGCTATACAAAGGAGGATCATCTCCTCTATTTTAACATCATGTCACTCTGGTCTCAAGACCATAGAAAATGAAATGTGCAGATGTGCGGCCGTGACCAGCAGTGGGTAG 1701 0.418 MEDLMDNDKLYSSIKMTEADGDCSLVFELPENDPLFEKKKKVLQAKGFDTKERVYFNSISCSSWTNTTLEKMLKRARIIHLDEVELYFGEVPVSPSVEFYSHRNELEALNSILSLIDISCSSCQHTRMDVLQELCNATLDRIQEVGDKNRLETRIVEDLSIEKEECILQWGERNDVRTKLKIAYVEGAGRGAIATEDLKVGDVALEIPMSIVISEELVHESDMFPILEKIDGISSETMLLLWSMKEKHNSNSKFNTYFNALPEAFNTGLSFEFDAIMVLAGTLLLEEIIEAKKHLNAQYEELVPALCKDHPDIFPPEFYTQEQFLWACELWYSNGMQVMFTDGKLRTCLIPIAGFLNHSLYPHIMHYGKVDSKTNSLKFCVSKPCNMGEQCYLSYGNFSSSHLVTFYGFIPQGDNLYDTIPLEIDNPQGDCPEEFHPMSDSATHMVRGTWLSNNHEIFHYGLPPPLLDHLRSAWSTVPPFKTPTLANLEVEKKVLGDILSTYETLMECIDDTEEDNRRNSSWDVKLAMEYKAIQRRIISSILTSCHSGLKTIENEMCRCAAVTSSG* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1148 566 CDD SET_LSMT 179 410 - -
Vvi11g1148 566 FunFam Transcription factor, E2F and DP-related 162 410 - -
Vvi11g1148 566 Pfam SET domain 189 396 IPR001214 GO:0005515
Vvi11g1148 566 Gene3D set domain protein methyltransferase, domain 1 162 410 - -
Vvi11g1148 566 Gene3D - 20 157 IPR036464 -
Vvi11g1148 566 FunFam SET domain-containing protein 20 157 - -
Vvi11g1148 566 ProSiteProfiles SET domain profile. 178 396 IPR001214 GO:0005515
Vvi11g1148 566 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 162 510 - -
Vvi11g1148 566 SUPERFAMILY SET domain 165 417 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi11g1148 SET 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1148 K19199 - vvi:100256524 1143.64