Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1138 ATGTATTCCCACAGTCAATTCGACGGCAACGCCGCCTTCTCTGGCGGGGGATTCATGCCCTCACAGGCCACTCAGGCCGCCGAACCTGGTTTTTCTCCTGCCAGAAATCGGGATACACAAGCGTTGCTTCCCTTGACCGTGAAGCAGATAAGTGAAGCTTTTCTCTCAAGCGATGATAAATCCAATTTTCTCATTGATGGTGTCGAAGTGAACAATGTCACACTTGTGGGGATGGTATTCAACAAAGCTGAAAGGGTTACTGATGTTGGTTTTATGCTGGATGATGGAACAGGGCGTATTGACTGTAACAGATGGGTCAATGAAGCTGTAGACACAAAGGAAATGGAAGGAATTCTAGATGGCATGTATGTTCGAGTTCATGGACACTTGAAGGGTTTTCAGGGTAAAAGGCATTTAAATGTCTTCTCTATTAGGCCTGTGACTGACTTTAATGAGATTGCCAGCCACTTCATTGAGTGTATCTATGTGCATATCTACAACACTAAATCACGGGCTGGTGGCCCTACTCAGTCCCATGTTACAAATCCGGCCATTGGTACCCCTTTAAAGGGTTACCAAGCTTCTCAACCAAATCAATTCTCTGGGCAATATGGTGCTGGACTTAAGGGCGTTGATCAACTGGTCATAGATTATTTGCAGCAACCTCAGTCCCTGGCTCGAGACCAGGGGGTAGGCCGGGATGAGCTTGCCCAACAGCTAAATGTTCCAGTCGATAAAATCATGGAATCTATTAGATCACTCGAAGAGGAAGGCCTGATTTACTCAACAATTGATGAATGGCATTACAAGTCAACTGGCAATGGTTGA 828 0.4577 MYSHSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDKSNFLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMYVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRAGGPTQSHVTNPAIGTPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQLNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1138 275 Pfam Replication protein A C terminal 164 266 IPR014892 -
Vvi11g1138 275 CDD RPA2_DBD_D 72 164 - -
Vvi11g1138 275 Gene3D - 34 169 IPR012340 -
Vvi11g1138 275 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g1138 275 SUPERFAMILY Nucleic acid-binding proteins 42 169 IPR012340 -
Vvi11g1138 275 PANTHER REPLICATION PROTEIN A-RELATED 6 274 IPR040260 -
Vvi11g1138 275 SUPERFAMILY "Winged helix" DNA-binding domain 207 273 IPR036390 -
Vvi11g1138 275 FunFam Replication protein A 32 kDa subunit 204 273 - -
Vvi11g1138 275 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Vvi11g1138 275 Gene3D - 203 274 IPR036388 -
Vvi11g1138 275 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1138 Vvi-Chr11 18423446 18429302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1138 1 270 Core DNA Replication Machinery Family AT2G24490 51.786 5.83e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1138 K10739 - vvi:100254758 559.681