Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1137 ATGGCTTCTAATCACAATTGGCTCGCCTTCTCTCTCTCCAACAACTCTCTCCCTTCCGACTCCTCCCAACTCTGCCTTTTCGAAGCCCTCTCCGCCTCAACCCATCACAATGGGGGTGTTGATAGAGAGCAGGGTTTTCCGGATCGTGGTGGCAGTGACCTCATCGGCGGCCCCAAGCTGGAGGACTTCCTCGGTGGAGGTGGAGGTGGAGGTGGAGCGGGTGCAGGTCTCGATCAGTTCTCGGCTAAAACTCCGGCGGGTTTGTCTGATGCTGAGATATACGAGTCCGAGCTGAAGACCATAGCTGCGAGCTTCTTACGTGGGTTTTCTTCAGAGCAAAGCGAGGCTCAGAAGCAGCTGGCGCTGACGCCGGAGCCGTCGCCGAAGAAGTCCGTCGACACCTTCGGCCAACGGACCTCCATTTACAGAGGAGTTACACGACATAGATGGACAGGGAGATATGAAGCCCATCTCTGGGACAACAGCTGCAGAAGAGAAGGACAGAGCCGGAAGGGACGACAAGTTTATTTGGGTGGGTATGATAAGGAAGAGAAGGCAGCTAGAGCTTATGATCTCGCCGCTCTTAAGTACTGGGGTCCGACCACCACCACTAACTTCCCTGTTTCTAACTATGAGAAAGAACTTGAGAATATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCAGAAGGAAAAGCTCTGGATTCTCGAGAGGAGCCTCTATTTACAGAGGAGTCACCAGACACCATCAGCATGGGAGATGGCAAGCCAGAATAGGAAGAGTTGCTGGGAACAAAGATCTCTATCTTGGAACATTCAGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAAAAGCATTGCCAACAGCAATCTCCCCATCGGAGGAGCAATAACCACTGGCAAACCAAAAACATCTCCCTCTGATTCTGCTTCCGATAGTGGAAGTCGCCGGTCTGAGGAGCAGGTTCAGGTTCTCTCTGGCCCATCAAATACACTCATTTTTTCCAAACCCCTCAAGCAAGATCACCATCAATCGGTTGATTACTGGTCCGTACTGGGGTACCAGGCCTCCACATTGAACAGTGTTGTGAAGAACCCCATATTGGAATCCTCCTTTCCATTTCAGACTTCTAGCAACTTGACCATGGATTTCTCCACAGCTTCTGCAGGCTTCCTCTGCAATGGTGGTGGGTACATTCAACAACAACAGAGCAACAGTAGTAGCAGCACTGCTTCAAGTTCAAACTCAATCCCATATGCAACACCCGTTAATGGTTTAAACAGCAGTACTAGCTATGAGGTCTCTGGGTACAACAGCTGGGCTGCTGCGACTGCTGCCGCTGCTGCTGCTGCTGCTGCACCATCTCTTCATTCATTCCAAGCTGCAAAGCCCAGTCTCTCAGTGTTCCAAACCCCGATATTTGGCATGGAATGA 1506 0.506 MASNHNWLAFSLSNNSLPSDSSQLCLFEALSASTHHNGGVDREQGFPDRGGSDLIGGPKLEDFLGGGGGGGGAGAGLDQFSAKTPAGLSDAEIYESELKTIAASFLRGFSSEQSEAQKQLALTPEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGAITTGKPKTSPSDSASDSGSRRSEEQVQVLSGPSNTLIFSKPLKQDHHQSVDYWSVLGYQASTLNSVVKNPILESSFPFQTSSNLTMDFSTASAGFLCNGGGYIQQQQSNSSSSTASSSNSIPYATPVNGLNSSTSYEVSGYNSWAAATAAAAAAAAAPSLHSFQAAKPSLSVFQTPIFGME* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1137 501 CDD AP2 140 209 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 SMART rav1_2 243 307 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 SMART rav1_2 141 213 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 Pfam AP2 domain 243 293 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 Pfam AP2 domain 141 199 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 ProSiteProfiles AP2/ERF domain profile. 243 301 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 FunFam AP2-like ethylene-responsive transcription factor ANT 140 209 - -
Vvi11g1137 501 MobiDBLite consensus disorder prediction 318 350 - -
Vvi11g1137 501 CDD AP2 242 303 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
Vvi11g1137 501 SUPERFAMILY DNA-binding domain 242 303 IPR016177 GO:0003677
Vvi11g1137 501 SUPERFAMILY DNA-binding domain 140 209 IPR016177 GO:0003677
Vvi11g1137 501 Gene3D AP2/ERF domain 141 209 IPR036955 GO:0003700|GO:0006355
Vvi11g1137 501 Gene3D AP2/ERF domain 243 303 IPR036955 GO:0003700|GO:0006355
Vvi11g1137 501 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 59 392 - -
Vvi11g1137 501 FunFam AP2-like ethylene-responsive transcription factor 242 303 - -
Vvi11g1137 501 ProSiteProfiles AP2/ERF domain profile. 141 207 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1137 Vvi-Chr11 18416054 18418577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1137 89 501 AP2-EREBP Transcription Factor Family AT5G57390 56.951 1.75e-155 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vvi11g1137 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1137 K09285 - vvi:100259877 924.08