Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1136 ATGGATTCTTCTTCTGAGGGCATTGTGTATGATCCATCAAAAATCAATAAGTTGAGTATGGAGGAAAAGAGAGAACTTGTCTATGCAGTCTCAAAGTGGTCACGTGGTGGCCCTGAAATGCTACAGTCATGGAGCCGTCAGGAGATTTTACAGATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAATATACCGGCTTGACAAAGTTGAAAATTATAGAACACCTTCTAAGAGTTGTTTCTGAAAAGAATTCAGTGGAGCAAGAGGTGGTTACAAACCATGAAATAAATCATGAATCACAGCCTTCAGCTGCAACTAACCAAAGAACTTCCAAGAGGCAACGGAAAGCTGATCACCCTTCTCGATTACCTGTTGCGGCAAACAATCATTCAATCAGTAATGGTGATGGTGATTTAGGCAATGCTATATACTGCAAAAACTTAGCTTGCAGAGCTAACTTAAGTCGAGAATATGAATTTTGCAAGAGGTGTTCATGCTGCATTTGTCATCAATACGATGACAACAAGGATCCTAGCTTGTGGTTAACTTGCAGCTCGGATCCTCCCTTTCAAGGTGTTTCCTGTGGCATGTCATGTCATCTTGAATGTGCTTTTAAACATGAAAAATCTGGCATTGCAAAGGATGGGCGGCATGTGAGACTAGATGGGAGCTTTTATTGTGTATCTTGTGGGAAAGTGAATGATATGCTCGGATGCTGGAGAAAACAATTGATGATGGCAAAAGAAACCAGAAGAGTGGACATACTATGTTACCGAGTCTCCTTGAGCCAAAAGCTTCTGAATGGAACAAAAAAGTACCAGAAGCTTTACGAAATTGTTGAGGAAGCTGTCAAGAAGCTTGAAGCAGAAGTGGGTCCTTTAACTGGTCTACCTGTAAAAACAGCACGGGGCATCGTTAATAGGCTTTCTTCTGGCCCAGAGGTTCAGAGGCTGTGTGCCCTTGCATTGGAGTCACTGGATTCCGTGCTCTCAAACTCTCACCCGCGTCCAGCACCCGGCCCTAAGATCCAAGATGCCGGTTTGGTAGCTCCAAGCATCAGATTTGAAGATGTCTGCTCAACATCTCTCACTGTGATTTTGGGTTCAGAAGATTCATCGACAGACAATGTGATCAGTTACAAATTATGGCATCGCAAGTCTAACGATTTGGAGTATCCTGCCGAACCTGCTTGTACTATGTTGGCACCCAACAAGAGGTTTACATTCTCTGATTTAACTCCATCCACAGAGTATGTTTTCAAGGTCGTTTCCTTCCAGGACACAAGAGAGTTAGGCATGGGTGAAGTTCAGTTCTCGACAAGCAGCAGTGGAGATGACATCCCAAAGAGTTTGGTAGCAGAGAGGAGTCAAAGCCCCGCCACCAACTGTAGCAGCCTATCCAATCCTTCCTCTGTGGAAGACGAAACTAATAACGTTACTCCCTACCATGACCAGAATGAGAATAGGGAGGACAATTATCCGGGTTACTGCAAGGGCACTGACAAAACTGTTTCTACAAATCTGTCTAATGAAGCAACGAACTGCACTGGCACTGATCAAGAAGGAAACCCAGCAGATTCAGTTTTTGTGTCAGATGATGAACGCGATCTGAGGGTTGTTGTCTCAATGCCTAAAGTCCTCAAACCTGACAACAAGACCTCACTCGAATGCCAGATCATAGAGGAGATGAGCACTGATAAGGAGGCAAATACTCCTGTTCGGACTGGCATGGAATGCGTGCCCTTCGTGGGTAGCTCGGAAGCTGGCCTGCCCATTACTCCCTGCAAGCTGGAAATCTTCAAGGACGGTCTGGGGAGGAATGGGAGGCCTAAACCCAGCACCATGGATCTGGACGATGGGTCTGGAAAGGGAGACGAGCCCCAAGCTGGCAGCTCATCAAAGAAACGAAGCGCAGAAAGACAGGATGAGGAATGTGCGGCGAATGGACCTTCTGACAGGGACTTTGAGTACTACGTCAAGGTGATCAGATGGTTGGAATGCGAGGGTCACGTCGAGAAGAACTTCAGGCAGAAGTTCTTGACCTGGTACAGCTTGAGAGCAACTCCACAGGAGGTCAGAATTGTGAAGGTGTTTGTTGATACTCTCATCGAAGATCCAGCATCACTTGCAGAGCAGCTCATCGATACCTTCTCGGAGACCATCTCAAGCAAGAGATCATCTGTCGTGCCTGCCGGCTTCTGTATGAAGCTGTGGCATTGA 2217 0.461 MDSSSEGIVYDPSKINKLSMEEKRELVYAVSKWSRGGPEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLRVVSEKNSVEQEVVTNHEINHESQPSAATNQRTSKRQRKADHPSRLPVAANNHSISNGDGDLGNAIYCKNLACRANLSREYEFCKRCSCCICHQYDDNKDPSLWLTCSSDPPFQGVSCGMSCHLECAFKHEKSGIAKDGRHVRLDGSFYCVSCGKVNDMLGCWRKQLMMAKETRRVDILCYRVSLSQKLLNGTKKYQKLYEIVEEAVKKLEAEVGPLTGLPVKTARGIVNRLSSGPEVQRLCALALESLDSVLSNSHPRPAPGPKIQDAGLVAPSIRFEDVCSTSLTVILGSEDSSTDNVISYKLWHRKSNDLEYPAEPACTMLAPNKRFTFSDLTPSTEYVFKVVSFQDTRELGMGEVQFSTSSSGDDIPKSLVAERSQSPATNCSSLSNPSSVEDETNNVTPYHDQNENREDNYPGYCKGTDKTVSTNLSNEATNCTGTDQEGNPADSVFVSDDERDLRVVVSMPKVLKPDNKTSLECQIIEEMSTDKEANTPVRTGMECVPFVGSSEAGLPITPCKLEIFKDGLGRNGRPKPSTMDLDDGSGKGDEPQAGSSSKKRSAERQDEECAANGPSDRDFEYYVKVIRWLECEGHVEKNFRQKFLTWYSLRATPQEVRIVKVFVDTLIEDPASLAEQLIDTFSETISSKRSSVVPAGFCMKLWH* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1136 738 MobiDBLite consensus disorder prediction 508 527 - -
Vvi11g1136 738 ProSiteProfiles Fibronectin type-III domain profile. 349 449 IPR003961 GO:0005515
Vvi11g1136 738 CDD PHD_VIN3_plant 164 229 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 508 524 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 453 482 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 92 129 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 602 647 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 453 497 - -
Vvi11g1136 738 CDD FN3 349 424 IPR003961 GO:0005515
Vvi11g1136 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 8 738 IPR044514 GO:0010048|GO:0040029
Vvi11g1136 738 MobiDBLite consensus disorder prediction 611 647 - -
Vvi11g1136 738 SUPERFAMILY Fibronectin type III 351 425 IPR036116 GO:0005515
Vvi11g1136 738 Pfam PHD - plant homeodomain finger protein 144 263 IPR032881 -
Vvi11g1136 738 Gene3D Immunoglobulins 348 439 IPR013783 -
Vvi11g1136 738 Coils Coil 269 289 - -
Vvi11g1136 738 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1136 Vvi-Chr11 18377589 18384429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1136 1 631 PHD Gene Family AT4G30200 46.767 2.41e-169 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1136 - - vvi:100251391 1495.72