Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1133 ATGAGATACATAAGGTCTGGCAGCTTCAAGAGGCTCTTCTCGGCTAAGAGGCGCAGTTTTGAGGAGGAAAGCCAGACCCCAGGTGGCTGTGCTCATGATGACGGCAATGAGGCCTTCGGGGTTGGTGGGAATGAAACAAAGCACCCGCAGAAACCCACCTGGAAATGCTTCTCCTATGAGGAGATTTTTCATGCCACCAGTGGGTTCAGCTCAGATAATTTGGTTGGAAAAGGAGGGTATGCAGAGGTGTACAGAGGAACCCTGGAAGATGGTGAGGCTGTTGCTGTGAAAAGGCTGACAAAAGCTTCCACTGATGAGAGAAAAGAGAAGGAGTTTCTCACAGAGATTGGAACAATTGGTCATGTATGCCATCCGAATGTCTCCTCACTCTTGGGCTGTTGTATAGACAATGGGCTCTATCTCATCTTCCAGTTCTTTTCAAGAGGCTCTGTTTCTTCTGTTCTTCATGATGAGAATTCTCTGTCATTGGATTGGAAAATAAGGTATAAGATTGCAGTTGGGACAGCCCGGGGCCTCCATTATCTGCATAAAGGCTGCCAGAGGAGGATAATTCACCGAGACATCAAGGCCTCCAACGTTCTATTGACTGCAGATTATGAGCCACAGATATCAGATTTCGGGTTAGCGAAATGGCTTCCATCGCAATGGACTCATCATTCAATTGTTCCAATAGAAGGAACATTTGGCCATTTAGCACCCGAATACTTCATGCATGGGATTGTTGATGAGAAGACCGATGTCTTTGCCTTTGGAGTCTTCCTCCTGGAGATCATTTCTGGCCGAAAACCGGTTGATGGGTCTCACCAAAGCTTGCATAGCTGGGCCAGACCTATCCTAAACCAAGGGGAAATTGAGAAGGTTGTGGACCCAAGGCTTGGAGGGATCTATGATGTTGCCCAGCTGAAGCGACTCACCTTTGCGTCGTCTCTTTGCATTAGGTCATCATCCATCTGGCGCCCGACCATGAGTGAGGTATTGGAGGCGATGCTGGGAGGGGAGATTGACGAAGAGAGGTGGAAGATGCCCGAGGAAGAAGAAGAGCAGGAAGAGTTCTGGGGTTTTGATGATCTTGAATGTGAAAGTGACTCTTCCTTCTCAACATCCCCACATGACTCAATCTCAACCCGAAGTATTTCTTAA 1161 0.478 MRYIRSGSFKRLFSAKRRSFEEESQTPGGCAHDDGNEAFGVGGNETKHPQKPTWKCFSYEEIFHATSGFSSDNLVGKGGYAEVYRGTLEDGEAVAVKRLTKASTDERKEKEFLTEIGTIGHVCHPNVSSLLGCCIDNGLYLIFQFFSRGSVSSVLHDENSLSLDWKIRYKIAVGTARGLHYLHKGCQRRIIHRDIKASNVLLTADYEPQISDFGLAKWLPSQWTHHSIVPIEGTFGHLAPEYFMHGIVDEKTDVFAFGVFLLEIISGRKPVDGSHQSLHSWARPILNQGEIEKVVDPRLGGIYDVAQLKRLTFASSLCIRSSSIWRPTMSEVLEAMLGGEIDEERWKMPEEEEEQEEFWGFDDLECESDSSFSTSPHDSISTRSIS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1133 386 SUPERFAMILY Protein kinase-like (PK-like) 48 335 IPR011009 -
Vvi11g1133 386 MobiDBLite consensus disorder prediction 367 386 - -
Vvi11g1133 386 MobiDBLite consensus disorder prediction 366 386 - -
Vvi11g1133 386 FunFam Putative receptor-like serine/threonine-protein kinase 39 145 - -
Vvi11g1133 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vvi11g1133 386 PANTHER OS08G0249100 PROTEIN 43 366 IPR046958 -
Vvi11g1133 386 Gene3D Transferase(Phosphotransferase) domain 1 146 359 - -
Vvi11g1133 386 FunFam Putative receptor-like serine/threonine-protein kinase 147 360 - -
Vvi11g1133 386 SMART serkin_6 69 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1133 386 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vvi11g1133 386 Gene3D Phosphorylase Kinase; domain 1 40 145 - -
Vvi11g1133 386 ProSiteProfiles Protein kinase domain profile. 69 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1133 386 Pfam Protein tyrosine and serine/threonine kinase 73 276 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1133 Vvi-Chr11 18358471 18361432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1133 20 332 Trihelix Transcription Factor Family AT1G68690 41.231 5.14e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi11g1133 PK_Tyr_Ser-Thr 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1133 - - vvi:100266827 761.911