Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1132 ATGGCAGAAGCAGCAGCAGCCCAACACCAGCTTTTGTTGGCGTGCACAGGGCTGCTTCTTCTTCTTCTGGTTTCCTCATCAAGCGTCGCTACAGCACGCTCAATCATCAAAACCCTACCTGGGTTCCCCGGGGAGCTTCCTTTCTACCTAGAAACTGGATATGTGGGTGTAGGTGAGAATGAATCAGTGCAGCTGTTCTACTACTTTGTCAAGTCCCAGAGGAACCCAGTATTGGACCCCCTTGTTCTTTGGCTCACTGGAGGCCCTGGTTGCTCCACACTCTCTGCATTCTTCTATGAAAGTGGTCCAGTTTCTTTCAATTTAACTTACAATGGAGGCCTACCAACACTTGAATTGAAGGAATATACATGGACTGAGACACTCAACATAATATATTTAGATGCACCTGTTGGAACTGGATTCTCTTACTCAACAACCCAAGAAGGTTACACTACGGACGACTACAAATCAGCAGCCCAGATCTATGAATTTCTAAAGAAGTGGCTGATACAACACCCTGAATTCCTGAAAAACAACCTCTATATCGGTGGAGATTCATACTCAGGCATACCTGTTCCAATGATAGTTCAAGACATATACTATGATAGTGAAAGAGGAGGATCTCCACGATTGAACTTGAACCTCCAAGGCTATGTGCTTGGGAACCCAGTGACTGATGCATATATTGATAAGAATTCAAGAGTACCATTTGCACACAGGCTCACACTCATTTCAGATGGACTCTATGAGTCTGCTAAAGCAAACTGCAATGGGGATTATGTTAATGCAAATGCCAGCAGCGAACAATGTGAATCAGACGTCCAAGAAATCGAAGAGTTGCTTAGAGACATAAACATTCAACAAATTTTGGACCCAGATTGCACCTTTTCCTCCCCGATACCAAACGAAGAAAAATCGAATCTTCAAAGGTCTCTTGCCGAGAATCCTACAGATTTTCTCTCACAACTTGGTGAAGAAACTATGTATTTTTGCCATGACTATATGTATATACTCTCTGAAACATGGGCGAATAATAGAGACGTGCGAGAAGCTCTTCATGTTCGGGAGGGAACAAAAGGATACTGGAAGAGGTGCAATATCAGTGGCCTGGCTTACACGGAAGATGTAATTAGTAGCGTTGCTTATCATCGAAATCTCTCCAAGACAGGCCTTCGAGCTTTAATATACAGCGGTGATCATGACATGTCTGTTCCGCATATTGGCACACAACAATGGATAGACTCGCTGAATTTGACGCTGGCCGATACCTGGCGGGCATGGTACACTGAAGGACAAGTTGCAGGATATACGAAAAGGTATACTAATGATGATTTCGCTCTCACATATGCGACTGTGAAGGTAAGAGAAACCCTAGTTCACTCAACTCTTTCCCTGAGATGTTTCTAG 1407 0.4385 MAEAAAAQHQLLLACTGLLLLLLVSSSSVATARSIIKTLPGFPGELPFYLETGYVGVGENESVQLFYYFVKSQRNPVLDPLVLWLTGGPGCSTLSAFFYESGPVSFNLTYNGGLPTLELKEYTWTETLNIIYLDAPVGTGFSYSTTQEGYTTDDYKSAAQIYEFLKKWLIQHPEFLKNNLYIGGDSYSGIPVPMIVQDIYYDSERGGSPRLNLNLQGYVLGNPVTDAYIDKNSRVPFAHRLTLISDGLYESAKANCNGDYVNANASSEQCESDVQEIEELLRDINIQQILDPDCTFSSPIPNEEKSNLQRSLAENPTDFLSQLGEETMYFCHDYMYILSETWANNRDVREALHVREGTKGYWKRCNISGLAYTEDVISSVAYHRNLSKTGLRALIYSGDHDMSVPHIGTQQWIDSLNLTLADTWRAWYTEGQVAGYTKRYTNDDFALTYATVKVRETLVHSTLSLRCF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1132 468 Gene3D - 331 454 - -
Vvi11g1132 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 453 IPR001563 GO:0004185|GO:0006508
Vvi11g1132 468 Pfam Serine carboxypeptidase 40 453 IPR001563 GO:0004185|GO:0006508
Vvi11g1132 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Vvi11g1132 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Vvi11g1132 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Vvi11g1132 468 Coils Coil 267 287 - -
Vvi11g1132 468 FunFam Serine carboxypeptidase-like 19 29 300 - -
Vvi11g1132 468 SUPERFAMILY alpha/beta-Hydrolases 36 452 IPR029058 -
Vvi11g1132 468 Gene3D alpha/beta hydrolase 30 300 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1132 Vvi-Chr11 18346277 18351003 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1132 338 453 Calmodulin-binding Proteins AT2G22960 51.724 5.78e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1132 K16296 - vvi:100265066 894.419