LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g1125	ATGGAATGGGACAGCAACTCTGATCTGAGCGGCGACGAAGAGGAGGAGGGTTTCCTTCTCAGCGATGGCGGCCCGCTTCCGTTTCCCGCCGAGGGCTTGGTACAGACGGCGCCGTGTGGGTTCGTTGTCACCGACGCTTTGGAGCCTGACCACCCTATCATTTACGTCAACACCATGTTCGAGATGGTCACAGGGTATCAAGCTGAAGAGGTCCTCGGGCGTAATTGGTGGGAGGAGTTTAATAAAAGGGTTGGGTTTATGGTGAGAAATGGTAGGAAGGTGAAATTTTGGGAGGATAGATTATATGGTGATGAGTTCATGGAAGAGGCATTTCCTGAGTTGTTCTCTATAACCTTTGCAAAAGATGCTTGGGTAAACTTGTAA	384	0.5	MEWDSNSDLSGDEEEEGFLLSDGGPLPFPAEGLVQTAPCGFVVTDALEPDHPIIYVNTMFEMVTGYQAEEVLGRNWWEEFNKRVGFMVRNGRKVKFWEDRLYGDEFMEEAFPELFSITFAKDAWVNL*	128

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g1125	127	Pfam	PAS domain	38	101	IPR000014	-
	Vvi11g1125	127	PANTHER	PROTEIN TWIN LOV 1	41	75	-	-
	Vvi11g1125	127	Gene3D	PAS domain	23	122	-	-
	Vvi11g1125	127	SUPERFAMILY	PYP-like sensor domain (PAS domain)	33	80	IPR035965	-
	Vvi11g1125	127	NCBIfam	PAS domain S-box protein	35	78	IPR000014	-
	Vvi11g1125	127	ProSiteProfiles	PAS repeat profile.	33	75	IPR000014	-
	Vvi11g1125	127	CDD	PAS	37	80	IPR000014	-
	Vvi11g1125	127	MobiDBLite	consensus disorder prediction	1	19	-	-
	Vvi11g1125	127	MobiDBLite	consensus disorder prediction	1	24	-	-

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g1125	Vvi-Chr11	18261343	18262861	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g1125	41	76	AGC Kinase Gene Family	AT3G45780	52.778	4.82e-07	45.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g1125	K12115		-	vvi:100244508	159.458

Showing 1 to 1 of 1 entries