Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1125 ATGGAATGGGACAGCAACTCTGATCTGAGCGGCGACGAAGAGGAGGAGGGTTTCCTTCTCAGCGATGGCGGCCCGCTTCCGTTTCCCGCCGAGGGCTTGGTACAGACGGCGCCGTGTGGGTTCGTTGTCACCGACGCTTTGGAGCCTGACCACCCTATCATTTACGTCAACACCATGTTCGAGATGGTCACAGGGTATCAAGCTGAAGAGGTCCTCGGGCGTAATTGGTGGGAGGAGTTTAATAAAAGGGTTGGGTTTATGGTGAGAAATGGTAGGAAGGTGAAATTTTGGGAGGATAGATTATATGGTGATGAGTTCATGGAAGAGGCATTTCCTGAGTTGTTCTCTATAACCTTTGCAAAAGATGCTTGGGTAAACTTGTAA 384 0.5 MEWDSNSDLSGDEEEEGFLLSDGGPLPFPAEGLVQTAPCGFVVTDALEPDHPIIYVNTMFEMVTGYQAEEVLGRNWWEEFNKRVGFMVRNGRKVKFWEDRLYGDEFMEEAFPELFSITFAKDAWVNL* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1125 127 Pfam PAS domain 38 101 IPR000014 -
Vvi11g1125 127 PANTHER PROTEIN TWIN LOV 1 41 75 - -
Vvi11g1125 127 Gene3D PAS domain 23 122 - -
Vvi11g1125 127 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 80 IPR035965 -
Vvi11g1125 127 NCBIfam PAS domain S-box protein 35 78 IPR000014 -
Vvi11g1125 127 ProSiteProfiles PAS repeat profile. 33 75 IPR000014 -
Vvi11g1125 127 CDD PAS 37 80 IPR000014 -
Vvi11g1125 127 MobiDBLite consensus disorder prediction 1 19 - -
Vvi11g1125 127 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1125 Vvi-Chr11 18261343 18262861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1125 41 76 AGC Kinase Gene Family AT3G45780 52.778 4.82e-07 45.4