Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1123 ATGCCTCGCCTCCTAGCAGAAGGCTGCCGACCACCGCATCATTCTCCAGCTTTATTCTTTTTCCTAGTAGCAGCAGTTGTGCTTCTAATATTTCTGATTCTCATTTTAGTCTCATGGAAATTTAAAAATTTAGCAGAGCTGAAGAAGTTGGTTACAGAAACTAAAAGGCTTCAAGAAGCCAAAGATTTTTGTAGTGGAAATCTTCGAACAGTAGGCCAATTTGACTTCCGCTCATTAAAGAAGGCCACAAAGAACTTTCACCCCAGTAATCTTCTAGGAAGAGGTGGATTTGGGCCTGTTTATCGGGGAAAATTAAGAGATGGAAAGTTGGTGGCTGTAAAGAAATTATCTCTTGACAAGTCCCAGCAAGGAGAAGCAGAGTTCCTTGCAGAGGTGAAGATGATCACAAGCATCCAACACAAGAATCTGGTTCGTCTTCTTGGATGTTGCTCAGATGGGCCTCAAAGGTTGCTTGTGTATGAATACATGAAAAATAGGAGCTTGGACCTCATCATATATGAAAGAAATGATCAGTTCCTGAATTGGAATACTCGATTCCAAATAATACTTGGCATTGCTCGAGGATTGCAGTACCTACATGAAGATTCACACCTGAGAATTGTTCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAGATTTCAACCAAGGATTGGAGATTTTGGGCTGGCTAGGTTCTTCCCAGAGGACGAGGCTTATCTCAGCACTGCCTTTGCTGGAACTCTAGGTTATACAGCACCTGAATATGCCATTAGAGGAGAATTGTCTGAAAAGGCTGACATCTACAGCTTTGGAGTTTTGGTACTTGAAATCATCGGCTGCAGGAAAAACACCGATCTTACTTTATCATCAGAAATGCAATATCTCCCTGAATATGCTTGGAAGCTATATGAGAAGTCCAGGGTGATTGATCTGGTAGATCCAAGAATTCAAGAAGATGGGTTTGTGGAGAACCATGTGTTGCAAGTAAACCATGTGTTGCAAGTAATCCATGTGGCCTTGTTTTGTCTTCAACCTTATGCAAACTTGAGACCGCCAATGTCAGAGGTCGTAGCAGTGTTAACATGCAGAGCTGATATGGTTGGAACACCCATGAAACCGGCCTTTTTGGACCGCAAGCAGGACAAGAACATCTCTTCGGATACTATTTCAGAGGCTTTCCCTTCTCCTCTGCACAGTGATTCTCCTTCCTCATCTCAACAGCCAAAGATTTCAGAGGCTTTCCCTTCTCCTCTGCACAGTGATTCTCCTTCCTCATCTCAACAGCCAAAGATTTCAGAGGCTTTCCCTTCTCCTCTGCACGGTGATTCTCCTTCCTCATCTCAACAGCCAAAGTGA 1365 0.4308 MPRLLAEGCRPPHHSPALFFFLVAAVVLLIFLILILVSWKFKNLAELKKLVTETKRLQEAKDFCSGNLRTVGQFDFRSLKKATKNFHPSNLLGRGGFGPVYRGKLRDGKLVAVKKLSLDKSQQGEAEFLAEVKMITSIQHKNLVRLLGCCSDGPQRLLVYEYMKNRSLDLIIYERNDQFLNWNTRFQIILGIARGLQYLHEDSHLRIVHRDIKASNILLDDRFQPRIGDFGLARFFPEDEAYLSTAFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIIGCRKNTDLTLSSEMQYLPEYAWKLYEKSRVIDLVDPRIQEDGFVENHVLQVNHVLQVIHVALFCLQPYANLRPPMSEVVAVLTCRADMVGTPMKPAFLDRKQDKNISSDTISEAFPSPLHSDSPSSSQQPKISEAFPSPLHSDSPSSSQQPKISEAFPSPLHGDSPSSSQQPK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1123 454 ProSiteProfiles Protein kinase domain profile. 86 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1123 454 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 395 - -
Vvi11g1123 454 MobiDBLite consensus disorder prediction 391 454 - -
Vvi11g1123 454 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 163 373 - -
Vvi11g1123 454 Gene3D Transferase(Phosphotransferase) domain 1 163 373 - -
Vvi11g1123 454 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Vvi11g1123 454 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1123 454 FunFam Cysteine-rich receptor-like protein kinase 10 50 162 - -
Vvi11g1123 454 Pfam Protein kinase domain 87 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1123 454 CDD STKc_IRAK 92 364 - -
Vvi11g1123 454 SUPERFAMILY Protein kinase-like (PK-like) 71 363 IPR011009 -
Vvi11g1123 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1123 Vvi-Chr11 18220060 18229204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1123 74 409 Receptor kinase-like Gene Family AT1G56120 46.588 1.84e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi11g1123 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1123 - - vvi:100246157 837.41