Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1107 ATGTCTTCAGCTACAACTCCTTTCCTGGACTCCTCTCCAGCTGTTGAACCACTAATTCTACAGGTAGAGGAGGAGGAGGATGGTGAACGCAAACCGAAATTTCGGGTCAGGAACCTGATCAAGGTTTCGGAATCGGGAGAGGCGATACTGCGAGGGATCGACGTGGACGTGCCGAAAGGGGCGATCGTGGGGGTGATAGGGCCGAGCGGGAGTGGGAAATCAACGCTGCTGCGGGTGCTGAACCGGCTGTGGGAACCGCCGTCCGGCACGGTGTACTTGGACGGCACCGATATTCGGGAACTGGATGTGCTCGGACTCCGCCGAAAAGTCGGCATGCTTTTCCAGCTGCCAGTTCTCTTTGAGGGCACGGTTGCTGATAACATTCGATATGGACCGCAATTGAGAGGGAAAAAACTAACTGATAATGAAGTACTCAAATTGCTCACCCTTGCAGACCTTGATTCCTCTTTTATGAAGAAAACCGGTGGTGAATTATCTGTTGGGCAAGCTCAAAGAGTTGCACTTGCAAGGACCCTAGCTAATGAACCAGAGGTTTTGTTGTTGGATGAACCGACAAGTGCGTTAGACCCAATATCGACACAAAACATAGAGGATGTTATAGTGAAGCTGAAGAAAAGCCGAGGAATGACAGTAGTGATGGTGTCTCACAGCATTAAACAGATACAGAGGATTGCTGATAGAGTGTGCCTACTTGTTGATGGTGAGATCATTGAAGTCTTAGAACCGGATAAACTATCTGAAGCCAGGCACCCCATGGCACTTAGGTTCCTTCAACTCAGCTCTTGA 807 0.4969 MSSATTPFLDSSPAVEPLILQVEEEEDGERKPKFRVRNLIKVSESGEAILRGIDVDVPKGAIVGVIGPSGSGKSTLLRVLNRLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKSRGMTVVMVSHSIKQIQRIADRVCLLVDGEIIEVLEPDKLSEARHPMALRFLQLSS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1107 268 SMART AAA_5 59 242 IPR003593 GO:0016887
Vvi11g1107 268 Pfam ABC transporter 50 193 IPR003439 GO:0005524
Vvi11g1107 268 CDD ABC_PstB_phosphate_transporter 34 252 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vvi11g1107 268 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 23 267 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vvi11g1107 268 FunFam ABC transporter, ATP-binding protein 31 263 - -
Vvi11g1107 268 Gene3D - 32 265 IPR027417 -
Vvi11g1107 268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 265 IPR003439 GO:0005524
Vvi11g1107 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 254 IPR027417 -
Vvi11g1107 268 ProSitePatterns ABC transporters family signature. 165 179 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1107 Vvi-Chr11 17951256 17953886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1107 49 266 Calmodulin-binding Proteins AT2G36910 32.174 3.52e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1107 K02068 - vvi:100249647 514.612