Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1105 ATGAGTCTTCTCGGTTTCTCGTGTCTCGTCTTTTGGCTCTTCTTCTGTGTAGATGGTGGAGTTGGAGCCGATGATGTGGTGGTGGTGGCCGCTAATCCTTCGCAGTCTCCGCCACTGCCGCCGCCGGCCTTGCCCAGGCCTAATTTTTCTCCGTTTAGGCCGAGTATAGCGGTGATAGTGGGGGTTCTCACTACTATGTTCTCCATTACTTTTCTTCTTCTTCTCTACGCCAAACACTGCAAGAGAGGAAACGGCGTCGTTTACACCGGAACGCCTCCGCTTTCCTCCGCTGCCAGGAAAAACTCCGGCATTGACAGAACGGTGATCGAGTCGCTGCCGGTTTTCCGATTCGCGTCGCTCCGCGGCCAGAAGGACGGGCTCGAGTGCGCTGTTTGCTTGAACCGGTTCGAGCCCACCGAAATCCTGCGGCTGTTGCCGAAATGCAAGCACGCTTTCCACGTCGAATGCGTGGACACCTGGCTCGACGCCCACTCCACCTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGATATCCTCCTCGTGGAAGAGCCGAAAATCTCGGTGGCACCACCGCCGGAGCCAGACCCTCCCGAGGTCGAAAAACCGGACGCCGAACCACGAAACCCAGAAGTCCGGCGAGTTTCGGGGAGGCATTCGTCGGCGGGGGAGAGGCGCAGTGGGTTAGTCCAAATCGTTTTACACAAACCTGACGAAACGACGTCATCGAGGAGGTCCCTCGACAGCTCCAGCTCCAGCTCAAGAAAGAGAAACGAGCCCGTAGCCGTGGGATGCTTTGACAGACCGAGAAAGGACGAATTGCTGCTTACCAGCGAAGACAGAAACAGCTTCGAGCGGCGGCTGGACCACCGGATCATAGTTTCCGCCGCTGGATCGGGAGGGTTCCACCAGCGGTGGAGCGACGTACAGCCGTCGGATCTACTGTATCTACGGTCAGAAATGATAATAAGCGACAACCGTCGATTGTCATCCTGTCATGGAACCATTGAAGGCGGCAGCTGGAGTGGCAGAAGTGTAATTAATTCAAGAAGCGTGTCGGAAATCACGGGCCTCAGCAGACTAGGTAGTAACTACCATCACCTCGACCGTCACCATCAACAGCGACAGGCAGGTGTCGTGTCGAGATGGTTGGCCTGGATCTCGCAATCGCGGCCATCTGTACGGTCAGAACGAGCCGGCAGGAGGCATGGATATTCCAGACGACTGGTGATGACCAATCAACACGTGGATCATAAGGGCAATGCATGGAATCACTGGAGAGCAACTTCTTTTTTATATTTAATTTTTTTTAAAAAGATATTATTCATATCTCGGATATATATCCGATGCCACGTTGGCTATTTTTTCAAATAA 1374 0.5437 MSLLGFSCLVFWLFFCVDGGVGADDVVVVAANPSQSPPLPPPALPRPNFSPFRPSIAVIVGVLTTMFSITFLLLLYAKHCKRGNGVVYTGTPPLSSAARKNSGIDRTVIESLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEEPKISVAPPPEPDPPEVEKPDAEPRNPEVRRVSGRHSSAGERRSGLVQIVLHKPDETTSSRRSLDSSSSSSRKRNEPVAVGCFDRPRKDELLLTSEDRNSFERRLDHRIIVSAAGSGGFHQRWSDVQPSDLLYLRSEMIISDNRRLSSCHGTIEGGSWSGRSVINSRSVSEITGLSRLGSNYHHLDRHHQQRQAGVVSRWLAWISQSRPSVRSERAGRRHGYSRRLVMTNQHVDHKGNAWNHWRATSFLYLIFFKKILFISRIYIRCHVGYFFK* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1105 457 CDD RING-H2_EL5-like 128 171 - -
Vvi11g1105 457 FunFam RING-H2 finger protein ATL43 104 178 - -
Vvi11g1105 457 SUPERFAMILY RING/U-box 106 176 - -
Vvi11g1105 457 MobiDBLite consensus disorder prediction 244 258 - -
Vvi11g1105 457 MobiDBLite consensus disorder prediction 197 221 - -
Vvi11g1105 457 MobiDBLite consensus disorder prediction 184 263 - -
Vvi11g1105 457 SMART ring_2 129 170 IPR001841 -
Vvi11g1105 457 Pfam Ring finger domain 128 171 IPR001841 -
Vvi11g1105 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Vvi11g1105 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 390 - -
Vvi11g1105 457 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1105 Vvi-Chr11 17936593 17938168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1105 26 386 C3H Transcription Factor Family AT5G05810 52.727 1.68e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1105 K19041 - vvi:100259882 724.546