Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1098 ATGGCCGTCGATTTTCTAGGATTCTCCAAGATGGACGAGCAGATGGCTATCCAGGAAGCCGCATCGGCCGGTTTGAAGAGCATGGAGCACCTGATCCTCCTCTTGAATCATCACCATCCTCAATCTCAGCAAATCAACCACTTCGATTGCAGAGAAATCACCGATTTCACAGTTTCCAAGTTCAAGCAAGTCATTTCCATCCTGAACCGGACCGGCCACGCCCGGTTCCGTCGCGGTCCGGTTACTTCTTCTCCTTCTCAGTCTCCTTATGACTTGTCTAATAAATCGGAATTGCCCAAACCGGTTGAGTCAAGCCCATTTCATTCGAACCTGATTCTATCTGCGAAGCCTGATCCGCTCAAATCGGAAGGCAACGCTAGCGTGTCGTCGACGACTTCGTCTTTCTTGTCGTCGATCACCGGAGACGGCAGCGTGTCGAACGGAAAATTAGGGACTCCTCTGTTCGCACCTCCTCCGGCTCCGGCGGTTTCCGCCGGTAAACCGCCTCTTTCGTCGTCTCAACGGAGGAAATGTCATGAGCATGGATCCTCCGACAACATCTCCGGAAAACTCTCTGTTTCCGGCCGCTGCCATTGCTCGAAAAGAAGGAAAAATCGTGTGAAGAGGACGATCAGAGTTCCTGCGATAAGCTCGAAGATCGCCGATATTCCCGCCGACGAGTACTCTTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGCTCACCATACCCACGAGGCTACTACAAATGTAGCAGCGTGAGAGGCTGCCCAGCGAGAAAACACGTGGAGCGCGCACCAGACGATCCGGCGATGCTCATCGTCACCTACGAGGGAGAGCACCGCCACTCTCAAACTCCGGCACCGGCCGGTGGGCTCATGTTCCCATCAACCTGA 894 0.5391 MAVDFLGFSKMDEQMAIQEAASAGLKSMEHLILLLNHHHPQSQQINHFDCREITDFTVSKFKQVISILNRTGHARFRRGPVTSSPSQSPYDLSNKSELPKPVESSPFHSNLILSAKPDPLKSEGNASVSSTTSSFLSSITGDGSVSNGKLGTPLFAPPPAPAVSAGKPPLSSSQRRKCHEHGSSDNISGKLSVSGRCHCSKRRKNRVKRTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAPDDPAMLIVTYEGEHRHSQTPAPAGGLMFPST* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1098 297 Gene3D WRKY domain 198 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g1098 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g1098 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g1098 297 FunFam WRKY transcription factor 65 208 285 - -
Vvi11g1098 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 287 IPR044810 GO:0003700
Vvi11g1098 297 MobiDBLite consensus disorder prediction 76 194 - -
Vvi11g1098 297 MobiDBLite consensus disorder prediction 123 147 - -
Vvi11g1098 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g1098 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
Vvi11g1098 297 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g1098 297 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1098 Vvi-Chr11 17821949 17823037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1098 1 296 WRKY Transcription Factor Family AT2G24570 54.268 7.06e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi11g1098 WRKY 5.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1098 - - vvi:100251308 588.571