Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1090 ATGACTTTATTCTTTAGCACTTACCCGATTTTCCTAAGGTTAAATGATGGTGATCATCAAAATCCAGAGACGGATATCGAAATTGGAGACATGAATCTTAATCATGATGATCACCACCCACATTCTCATGATTCCACTCCAACAACATATGATATTTCGCAAAGATCAATAGAGCAGAAGTTGATGGAAATGGCACCAAGCTTTGTATATGGGGGTGAAAGTGGAGGAGTAAAGTGCAGTACTAGTGAATGTGTGATTTGTTGGGAAGATTTTGAAGATGGAGAGATATGTAGGGTTCTTCCTGCATGCAACCATGTCTTCCATAAAGCTTGTGTGGGCTTATGGTTAATAGAAAAAAGGGTTTGCCCCCTTTGCCGTGTTTGTGTTGACATTTAA 396 0.3939 MTLFFSTYPIFLRLNDGDHQNPETDIEIGDMNLNHDDHHPHSHDSTPTTYDISQRSIEQKLMEMAPSFVYGGESGGVKCSTSECVICWEDFEDGEICRVLPACNHVFHKACVGLWLIEKRVCPLCRVCVDI* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1090 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 130 IPR013083 -
Vvi11g1090 131 SMART ring_2 84 125 IPR001841 -
Vvi11g1090 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 42 130 - -
Vvi11g1090 131 Pfam Ring finger domain 83 126 IPR001841 -
Vvi11g1090 131 SUPERFAMILY RING/U-box 83 129 - -
Vvi11g1090 131 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1090 Vvi-Chr11 17683751 17684146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1090 36 126 C3H Transcription Factor Family AT3G10910 35.870 2.43e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1090 - K10664 vvi:104879547 147.132