Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1089 ATGGGGAGTTTTTACGTGGTCTTCCTTGTAGGATTGCTGTTATTGCAGTCATGTGTGGTCAATTTGGCCATTTCTCCCTCAAACTTCACTGATCTGTCAGCTCTCCTTGCCTTCAAGTCTGAGATCAAACTGGATCCCAACAATGTTTTGGGGAGTAACTGGACCAAAACAGAGAACTTCTGCAACTGGGTTGGTGTCTCTTGTAGCCGTCGAAGACAGCGAGTGGTGGTTTTGAGCCTTGGAGACATGGGTCTCCAAGGCACCATTTCTCCTCATGTTGGTAACCTTTCCTTCCTTGTTGGGCTTGTTCTCTCTAATAACAGTTTCCATGGCCATCTGGTACCTGAAATAGGGCGTCTGCATCGCTTGAGAGCACTTATAGTAGAACGCAACAAACTGGAAGGAGAGATCCCTGCAAGTATACAGCACTGCCAAAAGCTTAAAATCATCTCTCTCAATTCCAATGAGTTTACAGGGGTCATACCAGCATGGTTAAGCAACTTTTCCTCACTTGGTACCCTATTCCTTGGAGAGAACAATTTTACAGGTACTATTCCAGCTTCTTTGGGTAATATTTCCAAGTTAGAATGGCTTGGTCTAGGTGAAAACAACCTCCATGGAATCATTCCGGATGAGATAGGGAATCTGAATTTGCAGGCAATTGCCTTGAACCTAAATCACCTTACTGGATCAATACCCCCCTCCATTTTCAATATCTCCTCCTTAACACAAATTGTCTTTTCATACAATTCCCTTTCCGGAACTCTTCCATCAAGTCTTGGTCTTTGGCTTCCAAATCTTCAGCAACTTTTCATAGAAGCAAATCAGCTTCATGGAAATATCCCTCTGTATCTATCAAATTGCTCTCAGCTCACACAGTTGATATTAACATCAAACCAATTTACTGGACCAGTCCCCACAAGTCTAGGCCGTCTAGAACACCTCCAAACGCTTATTCTGGCAGGAAATCATCTAACAGGTCCAATTCCAAAGGAAATTGGTTCCCTGAGGAATTTGAATCTGCTTAACTTGGCAGACAACAATCTGATCGGAAGCATTCCATCAACAATTAAGGGAATGAAAAGCCTGCAGAGGTTGTTTCTTGGTGGTAACCAACTTGAACAAATTATTCCTAGTGAGATTTGCCTCTTGAGTAACTTGGGCGAAATGAACCTCGGTTATAATAATCTGTCTGGATCAATTCCAAGTTGCATAGGAAATCTTCGTTATTTACAAAGGATGATCCTAAGTTCCAATTCACTATCCTCCTCAATTCCATCAAGCTTGTGGAGCCTTCAAAATCTCTTGTTCTTGGATTTCTCCTTTAATTCACTGAGTGGAAGCCTTGATGCAAACATGAGAGCATTGAAGTTGCTGGAAACCATGGACTTATATTGGAACAAAATTTCAGGTAACATTCCAACCATTTTGGGGGGCTTCCAAAGCTTGCGTTCTCTTAATCTATCAAGGAACTCATTCTGGGGACCTATTCCTGAATCACTTGGTGAAATGATAACACTGGATTACATGGACCTTTCCCACAACAATCTATCCGGCCTGATACCAAAGTCTCTTGTGGCACTTTCAAATCTTCACTACTTGAATTTGTCTTTCAATAAGCTGTCAGGGGAAATTCCAAGTGAAGGGCCCTTTGGAAACTTTACAGCAACATCTTTCATGGAGAATGAAGCACTTTGTGGGCAGAAAATCTTTCAAGTCCCACCTTGCAGAAGTCACGACACCCAAAAATCCAAAACTATGTTTCTTTTGAAAGTTATTCTTCCCGTCATTGCATCAGTGTCAATCCTTATTGCTCTCATTCTCATTGTGATAAAATATCGAAAGAGGAATGTGACAGCACTGAATTCAATTGATGTATTACCTTCTGTGGCGCATAGAATGATTTCATATCACGAGCTTCGTCGTGCAACAAATGATTTCTCTGAAGCCAACATCCTCGGAGTGGGAAGCTTTGGTTCTGTGTTCAAAGGAGTACTTTTTGATGGGACAAATGTTGCTGTTAAAGTTCTAAATTTGCAAATTGAGGGTGCTTTCAAAAGCTTTGATGCAGAATGTGAAGTGCTTGTAAGGGTTCGACACAGGAATCTCGTTAAAGTCATAAGTTCATGCTCCAACCCTGAGCTAAGAGCTCTAGTTTTGCAGTACATGCCCAATGGAAGCCTTGAGAAGTGGTTGTATTCTCACAACTACTGCTTAAATCTCTTTCAAAGAGTGAGCATCATGGTGGATGTTGCATTAGCTTTGGAATATCTCCATCATGGTCAATCAGAACCTGTGGTGCACTGTGATTTGAAGCCTAGCAATGTCCTCTTGGATGGTGAGATGATTGCTCATGTCGGTGACTTCGGCATTGCGAAGATTTTGGTAGAGAACAAGACTGCAACACAAACCAAGACTCTAGGTACTCTTGGCTACATCGCACCAGAGTATGGCTCGGAAGGAAGGGTGTCCACAAGAGGTGACATTTACAGCTATGGAGTAATGTTGTTGGAAATGTTTACAAGAAAGAAACCCACTGATGTTATGTTTGTTGGAGAATTGAGCTTGAGGCAATGGGTTATGACTTCAATTCCGGACAAAATAATGGAAGTCATAGATGGCAATTTACTAAGGATTGAAGATGGAAGAGATGTGATTGCAGCACAAGGTGACCTTTTGGCAATAATGGAACTAGGCTTGGAGTGTAGCAGAGAATTCCCTGAGGAGAGGGTTGACATAAAAGAGGTTGTGGTCAAGCTTAACAAGATCAAATTAAAACTATTTTGA 2787 0.4177 MGSFYVVFLVGLLLLQSCVVNLAISPSNFTDLSALLAFKSEIKLDPNNVLGSNWTKTENFCNWVGVSCSRRRQRVVVLSLGDMGLQGTISPHVGNLSFLVGLVLSNNSFHGHLVPEIGRLHRLRALIVERNKLEGEIPASIQHCQKLKIISLNSNEFTGVIPAWLSNFSSLGTLFLGENNFTGTIPASLGNISKLEWLGLGENNLHGIIPDEIGNLNLQAIALNLNHLTGSIPPSIFNISSLTQIVFSYNSLSGTLPSSLGLWLPNLQQLFIEANQLHGNIPLYLSNCSQLTQLILTSNQFTGPVPTSLGRLEHLQTLILAGNHLTGPIPKEIGSLRNLNLLNLADNNLIGSIPSTIKGMKSLQRLFLGGNQLEQIIPSEICLLSNLGEMNLGYNNLSGSIPSCIGNLRYLQRMILSSNSLSSSIPSSLWSLQNLLFLDFSFNSLSGSLDANMRALKLLETMDLYWNKISGNIPTILGGFQSLRSLNLSRNSFWGPIPESLGEMITLDYMDLSHNNLSGLIPKSLVALSNLHYLNLSFNKLSGEIPSEGPFGNFTATSFMENEALCGQKIFQVPPCRSHDTQKSKTMFLLKVILPVIASVSILIALILIVIKYRKRNVTALNSIDVLPSVAHRMISYHELRRATNDFSEANILGVGSFGSVFKGVLFDGTNVAVKVLNLQIEGAFKSFDAECEVLVRVRHRNLVKVISSCSNPELRALVLQYMPNGSLEKWLYSHNYCLNLFQRVSIMVDVALALEYLHHGQSEPVVHCDLKPSNVLLDGEMIAHVGDFGIAKILVENKTATQTKTLGTLGYIAPEYGSEGRVSTRGDIYSYGVMLLEMFTRKKPTDVMFVGELSLRQWVMTSIPDKIMEVIDGNLLRIEDGRDVIAAQGDLLAIMELGLECSREFPEERVDIKEVVVKLNKIKLKLF* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1089 928 SUPERFAMILY RNI-like 217 548 - -
Vvi11g1089 928 CDD STKc_IRAK 653 923 - -
Vvi11g1089 928 Gene3D Transferase(Phosphotransferase) domain 1 723 927 - -
Vvi11g1089 928 PANTHER OS04G0122200 PROTEIN 109 216 - -
Vvi11g1089 928 FunFam Leucine-rich repeat receptor-like protein kinase TDR 201 450 - -
Vvi11g1089 928 SMART LRR_typ_2 192 216 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 264 288 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 408 432 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 528 552 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 360 384 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 480 504 IPR003591 -
Vvi11g1089 928 SMART LRR_typ_2 312 336 IPR003591 -
Vvi11g1089 928 PRINTS Leucine-rich repeat signature 528 541 - -
Vvi11g1089 928 PRINTS Leucine-rich repeat signature 507 520 - -
Vvi11g1089 928 SMART serkin_6 647 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1089 928 Gene3D Ribonuclease Inhibitor 189 265 IPR032675 -
Vvi11g1089 928 SUPERFAMILY Protein kinase-like (PK-like) 628 920 IPR011009 -
Vvi11g1089 928 Pfam Protein kinase domain 648 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1089 928 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Vvi11g1089 928 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vvi11g1089 928 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 723 928 - -
Vvi11g1089 928 Gene3D Ribonuclease Inhibitor 266 585 IPR032675 -
Vvi11g1089 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Vvi11g1089 928 SUPERFAMILY L domain-like 54 261 - -
Vvi11g1089 928 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Vvi11g1089 928 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 188 - -
Vvi11g1089 928 ProSiteProfiles Protein kinase domain profile. 647 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1089 928 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 451 573 - -
Vvi11g1089 928 FunFam Serine-threonine protein kinase plant-type 628 722 - -
Vvi11g1089 928 Pfam Leucine rich repeat 337 397 IPR001611 GO:0005515
Vvi11g1089 928 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Vvi11g1089 928 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Vvi11g1089 928 Gene3D Phosphorylase Kinase; domain 1 622 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1089 Vvi-Chr11 17661520 17664454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1089 30 928 Receptor kinase-like Gene Family AT3G47570 39.431 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g1089 Pkinase 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1089 - - vvi:100240972 1692.55