Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1088 ATGTTAATGGGAAGGCTTTTTACGGTCTCCCTCATAGGAGTGCTATTACTGCATTCATGTACCGTCAGTTTGGCGCTTTCTTCCTCAAACTTCACTGATTTATCTGCTCTGCTTGCCTTCAAGTCTGAGATCAAGATTGACCCCAACAACATTTTGGGGAGCAACTGGACTGAAACTGAGAACTTCTGCAACTGGGTTGGTGTCTCTTGTAGCCGTCGCAGACAGCGAGTAACAGCTTTGAGCCTTAGAAACATGGGTCTCCAAGGCACCATTTCTCCTCATGTTGGTAACCTTTCCTTCCTCGTCAAGTTTGATCTCTATAACAATAGCTTTCATGGCCATCTGATACCTGAAATAGGCCATCTACGTCGCCTGGTAGTCCTAAATATGCACCGGAACTTGATGGAAGGAGCCATCCCTACAAGCTTACACCAGTGCCAAAAGCTTGAAGGAATTGACTTACATGCTAATAATCTCACTGCTGGAAACATCCCATTGTATATATCAAATTGTTCTCAGCTCAAATATATACAGTTACCTTTGAACCAGTTTAGTGGACCAGTCCCCACAAGTCTAGGCCAGCTAGAACACCTACAAGAACTTGATCTGGAAATAAATCAGCTAACAAGTCAATCAGACAGTCTTGAACTCAGTTTCCTTACTTCCTTGACAAGATGTAGGTCATTGGAAAAGTTGTATATAAGTGGGAATCCATTGAATGGCCTCCTACCAGTTTCTATTGGAAACCTCTCAAGTTCCCTTCAAGACTTCGTTGCATATTCATGTCAAATAAAGGGTCCAATCCCAAAGGAGATTGGGTCCTTAAGAAATTTGAATCAGCTTGATTTGAGTGAGAACAACATGACTGGAAGCATTCCATCAACAATCAAGGGAATGAAAAGCCTGCAGAGCTTAAGTTCTCTCAACTTGTCACATAACTCATTCTGGGGGCCTATTCCTGAATCCTTTAGAGAATTGATAACATTGGATTACATGGATCTCTCCCACAACAATATATCCGGATCAATTCCCAAATCTATGGTGGCACTTTCACATCTCCAATATTTGAACTTATCTTTCAATAATCTGTCAGGGGAAATTCCAAGTGAAGGGCCTTTTGCAAACTTCACAGCAGCATCTTTTGTGGAGAATGAAGCACTTTGCGGACTGCCGATTTTTCAAGGTGCTTTCAAAAGTTTTGAAGCAGAATGTAAGGTGCTTGCAAGGGTTCGACACAGGAATCTTGTAAGAGTCATAAGTTCATGCTCCAACCCTGAGCTAAGGGCTGTGGTTTTGCAGTACATGCCCAATGGAAGCCTTGAGAAGTGGTTGTATTCTCACAACTACTGCCTAAATCTCTTCCAAAGAGTGAGCATCATGGTGGATGTTGCATTAGCTTTGGAATATCTCCATCATGGTCAATCAGAGCCTGTGGTGCACTGTGATTTGAAGCCTAGCAATGTCCTCTTGGATGATGACATGGTTGCTCATGTGGGTGACTTTGGCATTGCAAAGATTTTGGTAGAGAAAAAGTCGACAACACAAACCAAGACTCTAGGTACTCTCGGCTACATTGCACCAGAGTATGGCTTGGAAGGAAGAGTGTCCACAAGAGGTGACATTTACAGCTATGGGATAATGTTATTGGAAATGCTTACAAGAAAGAAACCCACTGATGATATGTTTGTAGGAGAATTTTATGTGGTTGCAGCACAAGATCATCTTTTGGAGATAATGGAACTTGGCTTGGAGTGTAGCAAAGAATTTCCAGAAGAACGGATTGACATAAAAGATGTTGTGGTGAAGCTTAACAAGATCAAAGTGCAAATCATTGCAACTCATTTGGAATAG 1851 0.4203 MLMGRLFTVSLIGVLLLHSCTVSLALSSSNFTDLSALLAFKSEIKIDPNNILGSNWTETENFCNWVGVSCSRRRQRVTALSLRNMGLQGTISPHVGNLSFLVKFDLYNNSFHGHLIPEIGHLRRLVVLNMHRNLMEGAIPTSLHQCQKLEGIDLHANNLTAGNIPLYISNCSQLKYIQLPLNQFSGPVPTSLGQLEHLQELDLEINQLTSQSDSLELSFLTSLTRCRSLEKLYISGNPLNGLLPVSIGNLSSSLQDFVAYSCQIKGPIPKEIGSLRNLNQLDLSENNMTGSIPSTIKGMKSLQSLSSLNLSHNSFWGPIPESFRELITLDYMDLSHNNISGSIPKSMVALSHLQYLNLSFNNLSGEIPSEGPFANFTAASFVENEALCGLPIFQGAFKSFEAECKVLARVRHRNLVRVISSCSNPELRAVVLQYMPNGSLEKWLYSHNYCLNLFQRVSIMVDVALALEYLHHGQSEPVVHCDLKPSNVLLDDDMVAHVGDFGIAKILVEKKSTTQTKTLGTLGYIAPEYGLEGRVSTRGDIYSYGIMLLEMLTRKKPTDDMFVGEFYVVAAQDHLLEIMELGLECSKEFPEERIDIKDVVVKLNKIKVQIIATHLE* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1088 616 Gene3D Ribonuclease Inhibitor 147 214 IPR032675 -
Vvi11g1088 616 Gene3D Ribonuclease Inhibitor 31 146 IPR032675 -
Vvi11g1088 616 Gene3D Ribonuclease Inhibitor 302 390 IPR032675 -
Vvi11g1088 616 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 89 591 - -
Vvi11g1088 616 FunFam Nuclear pore complex protein NUP107 30 180 - -
Vvi11g1088 616 ProSiteProfiles Leucine-rich repeat profile. 197 218 IPR001611 GO:0005515
Vvi11g1088 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vvi11g1088 616 Coils Coil 198 218 - -
Vvi11g1088 616 Gene3D Ribonuclease Inhibitor 215 301 IPR032675 -
Vvi11g1088 616 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi11g1088 616 SUPERFAMILY L domain-like 59 392 - -
Vvi11g1088 616 SMART serkin_6 362 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1088 616 Gene3D Transferase(Phosphotransferase) domain 1 439 614 - -
Vvi11g1088 616 Pfam Protein kinase domain 398 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g1088 616 PRINTS Leucine-rich repeat signature 350 363 - -
Vvi11g1088 616 PRINTS Leucine-rich repeat signature 278 291 - -
Vvi11g1088 616 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515
Vvi11g1088 616 Pfam Leucine Rich Repeat 228 250 IPR001611 GO:0005515
Vvi11g1088 616 SMART LRR_typ_2 275 298 IPR003591 -
Vvi11g1088 616 SMART LRR_typ_2 350 375 IPR003591 -
Vvi11g1088 616 SMART LRR_typ_2 302 325 IPR003591 -
Vvi11g1088 616 SMART LRR_typ_2 195 218 IPR003591 -
Vvi11g1088 616 SUPERFAMILY Protein kinase-like (PK-like) 395 607 IPR011009 -
Vvi11g1088 616 FunFam LRR receptor-like serine/threonine-protein kinase EFR 435 579 - -
Vvi11g1088 616 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 211 399 - -
Vvi11g1088 616 Gene3D Phosphorylase Kinase; domain 1 391 438 - -
Vvi11g1088 616 ProSiteProfiles Protein kinase domain profile. 362 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1088 Vvi-Chr11 17655373 17658529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1088 87 614 Receptor kinase-like Gene Family AT3G47090 30.308 1.16e-73 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi11g1088 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1088 - - vvi:104880807 473.011