Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1086 ATGAGTCGTTTCAAGGGCTCGCCGTACCGGCGGCAAGATTTGGAGGTCGGAGACAGCCGGTCTGGAGGCTTCGACGGCGACGACGACGCCAGGGAAACTTCTTCTGGGCCCTTCGATATTGATAGCACCAAGAATATCCCCATCGCACGGCTCCGACGTTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGCCGATTTCGATACACATTGGACTTGAAAAAGGAAGAAGATAGGAAGCAGATAATAAGGAAGATTAGAGCACATGCACAAGTTATACGGGCTGCATATCTTTTTAAAGAAGCTGGGGATCGAGCAAATGGGATACCAATATCACCTCCAATCCCCAACGGTGATTATGGCATTGGACAAGAGGAGCTGGCTTCAATGACAAGGGATCACAATTCTAATGCTCTGCAGCAATATGATGGGGTTAAAGGGTTAGCAGAGTTGCTAAAAACAAATCTAGAGAAGGGAATTCTTGGAGATGATGCTGATTTACTACGACGAAGGAATGCATTTGGATCAAACACTTATCCCCGAAAAAAAGGAAGGAGTTTCTGGATGTTTCTCTGGGAAGCTTGGCAAGATTTAACCTTAATCATCTTGATGATAGCTGCAATTGCTTCCTTGGCGCTGGGTATAAAGACAGAGGGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTTACAGCTGTAAGTGATTACAGACAATCCCTTCAATTTCAAAGTCTAAATGATGAAAAGAGAAATATACATATGGAGATCATTAGAGGCGGTAGAAGAGTTGAGGTTTCAATATTTGATATTGTCGTTGGTGATGTTGTACCCCTCAACATAGGGAACCAGGTCCCTGCTGATGGAATTTTGATTTCTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCACAAGGACTCAAAGGCACCATTTCTAATGGCGGGCTGCAAAGTAGCAGATGGGAGTGGCATTATGCTGGTAACAAGTGTTGGGATAAATACTGAATGGGGATTGCTCATGGCTAGTATATCAGAAGACACTGGTGAAGAGACGCCATTGCAGGTACGATTAAATGGGGTTGCGACTTTCATTGGTATAGTTGGGCTCCTAGTGGCTTTGGTTGTCTTGGTTGTTCTTTTGGCAAGGTACTTTACTGGCCATACCAAAAATTCAGATGGAAGTAAGCAATTTATTCCAGGCCGGACAGGTGTTGGTGATGCGGTAGATGGAGCAATTAAAATTGTTACTGTTGCGGTCACAATTGTAGTTGTTGCAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCTTAACCCTTGCCTACTCAATGAGAAAAATGATGGTTGACAAAGCTTTGGTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGATGACTGTTGTTGTGGCTTATGCTGGTGGGAAGAAAATTGATACACCGGATAGAGGCTCACTCTCGTCTTCCCTGCTATCCTCTCTACTTATTGAAGGCATTGCACAAAATACAAATGGCAGTGTTTTTATTCCTGAGGGTGGTGGAGATGTAGAGGTTTCTGGGTCCCCAACAGAAAAGGCCATTCTCAATTGGGGAATCAAGATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGCCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTAGCCTCCTGTACTAGGTATATTGATGAAAATGACAATGTGGTCCCAATGACTGAAGATAAGGTGTTATTTTTCAAGAAAGCCATTGAAGATATGGCTGCAGGTAGTTTGCGTTGCGTTGCCATTGCATACAGACCCTATGAAATGGAAAACGTCCCAACTGATGAAGAGCAACTGGATCAGTGGGTACTTCCTGAGGATGACCTTGTTTTGCTGGCTATTGTTGGTATAAAGGATCCTTGCCGACCTGGTGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGGTACGGATGGTTACAGGTGACAATCTTCAAACAGCTAAAGCAATAGCCTTGGAATGTGGAATACTAGTTTCAGATGCAGATGCTACCGAGCCAAATCTCATCGAAGGAAAGTCATTTCGTGCCTTACCTGAATTGCAAAGACAGGATATTGCTGATAAGATATCGGTCATGGGAAGGTCTTCTCCAAATGACAAGCTTCTTCTTGTGCAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACACGAGGCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAGGTTGTCAGATGGGGACGATCTGTATATGCAAATATACAGAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCGAAGGGAACCATTGATAACAAATATCATGTGGAGGAATTTGTTGATTCAGGCCCTATATCAAGTGATCGTCCTGCTTGTCCTCAATTTCCGAGGTACAAGTATTCTGAAGTTAGAAGGTGACACTCCTGAACGTGCTAGCAAAGAGAAGAATACAGTGATATTCAATGCTTTTGTTCTTTGTCAGATATTCAATGAGTTTAATGCACGGAAGCCGGATGAAATTAATGTATTCAAAGGAGTCACTACCAACCGTCTTTTTATTGGGATAGTGGGAATAACTCTCGTGCTTCAGATCCTTATCATCGAATTTCTTGGGAAGTTTACATCAACTGTCAGATTGAATTGGCAGCTTTGGCTTGTTTGTATCGGTATTGGTATTATCAGTTGGCCTCTTGCGGCTCTTGGAAAACTGATGCCAGTCCCAAAAACTCCTCTTAGCAAGTTCTTTACAAGGATATGTCGCCGCAGGCGAGATTCCCAAAGTTAG 3237 0.4368 MSRFKGSPYRRQDLEVGDSRSGGFDGDDDARETSSGPFDIDSTKNIPIARLRRWRQAALVLNASRRFRYTLDLKKEEDRKQIIRKIRAHAQVIRAAYLFKEAGDRANGIPISPPIPNGDYGIGQEELASMTRDHNSNALQQYDGVKGLAELLKTNLEKGILGDDADLLRRRNAFGSNTYPRKKGRSFWMFLWEAWQDLTLIILMIAAIASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYRQSLQFQSLNDEKRNIHMEIIRGGRRVEVSIFDIVVGDVVPLNIGNQVPADGILISGHSLAIDESSMTGESKIVHKDSKAPFLMAGCKVADGSGIMLVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLLVALVVLVVLLARYFTGHTKNSDGSKQFIPGRTGVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRLSACETMGSSTTICSDKTGTLTLNQMTVVVAYAGGKKIDTPDRGSLSSSLLSSLLIEGIAQNTNGSVFIPEGGGDVEVSGSPTEKAILNWGIKIGMNFEAVRSGSSIIQVFPFNSEKKRGGVAIKLPDSQVHLHWKGAAEIVLASCTRYIDENDNVVPMTEDKVLFFKKAIEDMAAGSLRCVAIAYRPYEMENVPTDEEQLDQWVLPEDDLVLLAIVGIKDPCRPGVREAVQLCQKAGVKVRMVTGDNLQTAKAIALECGILVSDADATEPNLIEGKSFRALPELQRQDIADKISVMGRSSPNDKLLLVQALKKKGHVVAVTGDGTNDAPALHEADIGLAMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQALYQVIVLLVLNFRGTSILKLEGDTPERASKEKNTVIFNAFVLCQIFNEFNARKPDEINVFKGVTTNRLFIGIVGITLVLQILIIEFLGKFTSTVRLNWQLWLVCIGIGIISWPLAALGKLMPVPKTPLSKFFTRICRRRRDSQS* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1086 1078 Gene3D - 482 838 IPR023214 -
Vvi11g1086 1078 SFLD p-type atpase 467 845 IPR044492 -
Vvi11g1086 1078 NCBIfam calcium-translocating P-type ATPase, PMCA-type 136 1057 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi11g1086 1078 Pfam Cation transporter/ATPase, N-terminus 144 210 IPR004014 -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 241 361 - -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 9 plasma membrane-type 339 509 - -
Vvi11g1086 1078 NCBIfam HAD-IC family P-type ATPase 230 401 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1086 1078 NCBIfam HAD-IC family P-type ATPase 425 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1086 1078 NCBIfam HAD-IC family P-type ATPase 760 874 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1086 1078 Pfam E1-E2 ATPase 263 463 - -
Vvi11g1086 1078 SFLD C1.7: P-type atpase like 467 845 - -
Vvi11g1086 1078 Gene3D - 166 361 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vvi11g1086 1078 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Vvi11g1086 1078 Pfam Cation transporting ATPase, C-terminus 878 1054 IPR006068 -
Vvi11g1086 1078 SUPERFAMILY Calcium ATPase, transduction domain A 263 358 IPR008250 -
Vvi11g1086 1078 SUPERFAMILY HAD-like 483 898 IPR036412 -
Vvi11g1086 1078 SMART Cation_ATPase_N_a_2 138 215 IPR004014 -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 46 102 - -
Vvi11g1086 1078 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1057 IPR023298 -
Vvi11g1086 1078 PRINTS Sodium/potassium-transporting ATPase signature 478 499 - -
Vvi11g1086 1078 PRINTS Sodium/potassium-transporting ATPase signature 228 248 - -
Vvi11g1086 1078 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Vvi11g1086 1078 Gene3D - 495 693 IPR023299 GO:0000166
Vvi11g1086 1078 MobiDBLite consensus disorder prediction 1 42 - -
Vvi11g1086 1078 CDD P-type_ATPase_Ca_PMCA-like 167 926 - -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 193 250 - -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 686 838 - -
Vvi11g1086 1078 PANTHER CATION TRANSPORTING ATPASE 101 1057 - -
Vvi11g1086 1078 Gene3D - 193 1047 - -
Vvi11g1086 1078 Pfam haloacid dehalogenase-like hydrolase 482 807 - -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 810 1059 - -
Vvi11g1086 1078 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 77 IPR024750 GO:0005516
Vvi11g1086 1078 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 690 IPR023299 GO:0000166
Vvi11g1086 1078 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Vvi11g1086 1078 FunFam Calcium-transporting ATPase 495 693 - -
Vvi11g1086 1078 MobiDBLite consensus disorder prediction 1 35 - -
Vvi11g1086 1078 Gene3D - 48 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1086 Vvi-Chr11 17604544 17639841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1086 3 1076 Primary Pumps ATPases AT4G29900 73.723 0.0 1608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1086 K01537 - vvi:100251227 2018.05