Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1084 ATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTGCTGAAGAAGAGGAAGAGGAGTGAAGAATGGGCTTTGGCCAAAAAGCAGGAGCTGGAATGCACCAAGAAGAAGAATGCCACAAACCGCACGTTGATTTATGTTAGGGCTAAGCAGTATGCCAAGGAATACGATGAGCAGCAAAAGGAGCTGATTCAATTGAAGCGAGAGGCCAAATTGAAGGGTGGTTTCTATGTTAGCCCAGAAGCCAAGTTGCTGTTCATTATCAGAATTCGTGGGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAGATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGGGTATCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGGCTTTGGGCAAGTTTGGAATCATTTGCATTGAAGATCTCATCCATGAGATTATGACTGTTGGGCCACACTTCAAGGAGGCAAACAACTTCCTGTGGCCATTCAAGCTTAAGGCACCACTGGGTGGCCTTAAAAAGAAGAGAAATCACTACGTAGAAGGTGGTGATGCTGGAAACCGTGAAGATTACATTAATGAACTCATCAGGAGGATGAACTAG 738 0.4404 MGGEEVKGVVVPESVLKKRKRSEEWALAKKQELECTKKKNATNRTLIYVRAKQYAKEYDEQQKELIQLKREAKLKGGFYVSPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKFGIICIEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1084 245 PANTHER 60S RIBOSOMAL PROTEIN L7 9 245 IPR039699 -
Vvi11g1084 245 Coils Coil 51 75 - -
Vvi11g1084 245 Coils Coil 243 245 - -
Vvi11g1084 245 Gene3D - 86 190 IPR036919 -
Vvi11g1084 245 Gene3D - 191 245 IPR036919 -
Vvi11g1084 245 ProSitePatterns Ribosomal protein L30 signature. 105 137 IPR018038 -
Vvi11g1084 245 FunFam 60S ribosomal protein L7 86 190 - -
Vvi11g1084 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Vvi11g1084 245 SUPERFAMILY Ribosomal protein L30p/L7e 86 245 IPR036919 -
Vvi11g1084 245 NCBIfam 60S ribosomal protein uL30 12 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vvi11g1084 245 FunFam 60S ribosomal protein L7 191 245 - -
Vvi11g1084 245 Pfam Ribosomal L30 N-terminal domain 11 81 IPR012988 -
Vvi11g1084 245 CDD Ribosomal_L7_archeal_euk 86 245 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1084 Vvi-Chr11 17467878 17470915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1084 9 245 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.654 3.34e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1084 K02937 - vvi:100242794 463.381