LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g1084	ATGGGTGGAGAGGAAGTGAAGGGAGTTGTGGTTCCAGAATCGGTGCTGAAGAAGAGGAAGAGGAGTGAAGAATGGGCTTTGGCCAAAAAGCAGGAGCTGGAATGCACCAAGAAGAAGAATGCCACAAACCGCACGTTGATTTATGTTAGGGCTAAGCAGTATGCCAAGGAATACGATGAGCAGCAAAAGGAGCTGATTCAATTGAAGCGAGAGGCCAAATTGAAGGGTGGTTTCTATGTTAGCCCAGAAGCCAAGTTGCTGTTCATTATCAGAATTCGTGGGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAGATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGGGTATCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGGCTTTGGGCAAGTTTGGAATCATTTGCATTGAAGATCTCATCCATGAGATTATGACTGTTGGGCCACACTTCAAGGAGGCAAACAACTTCCTGTGGCCATTCAAGCTTAAGGCACCACTGGGTGGCCTTAAAAAGAAGAGAAATCACTACGTAGAAGGTGGTGATGCTGGAAACCGTGAAGATTACATTAATGAACTCATCAGGAGGATGAACTAG	738	0.4404	MGGEEVKGVVVPESVLKKRKRSEEWALAKKQELECTKKKNATNRTLIYVRAKQYAKEYDEQQKELIQLKREAKLKGGFYVSPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKFGIICIEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN*	246

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g1084	245	PANTHER	60S RIBOSOMAL PROTEIN L7	9	245	IPR039699	-
	Vvi11g1084	245	Coils	Coil	51	75	-	-
	Vvi11g1084	245	Coils	Coil	243	245	-	-
	Vvi11g1084	245	Gene3D	-	86	190	IPR036919	-
	Vvi11g1084	245	Gene3D	-	191	245	IPR036919	-
	Vvi11g1084	245	ProSitePatterns	Ribosomal protein L30 signature.	105	137	IPR018038	-
	Vvi11g1084	245	FunFam	60S ribosomal protein L7	86	190	-	-
	Vvi11g1084	245	Pfam	Ribosomal protein L30p/L7e	87	137	IPR016082	-
	Vvi11g1084	245	SUPERFAMILY	Ribosomal protein L30p/L7e	86	245	IPR036919	-
	Vvi11g1084	245	NCBIfam	60S ribosomal protein uL30	12	245	IPR005998	GO:0000463\|GO:0003735\|GO:0022625

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g1084	Vvi-Chr11	17467878	17470915	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g1084	9	245	Cytoplasmic Ribosomal Protein Gene Family	AT3G13580	85.654	3.34e-153	424

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g1084	K02937		-	vvi:100242794	463.381

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