Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1082 ATGGATATTGTGACTTTCATTTGGGGTGTTGGAACGAAGCTGTGGGGGCCGGTTACTCATCAGATAGGCTATCTGGTCCACTATAAGAAGAATTTGGAGAATCTCAAAGCTCAAGTAGAAGCACTAGAGGCCTTAAGGAAAGATAACCAAGAATCTGTGCGAGCAGCTGAAATGAATGGAGAAGAAATCAAAGCTCAGGTGCAGATATGGCTGAAAGGGGCTGATGCAGCTATAGTGGAGGTGGAGAAAGTGATAGATGATTTTAAATTGAACAAGAGATGCTTTTGGGGGTGTTGTCCTGATTGCACATCGCGGTACAAGCTAAGCAGGAAAGCAGTGAAAGATGCAGTCACCATTGGTGAACTTCAAGATAAAGGAAAATTTGACAGGGTCTCGCTCCAAATTAGGAAGCCCTTGGAGATTGAGTCCATGATCTCCACGGGAGATTTTGAGGCCTTCGAATCAACACAACAGGCAATGAATGAGGTCATGAAGGCACTAAGGGATGATAACGTTAATGTCATCGGGGTCTATGGAATGGGGGGCGTGGGCAAAACAACCATGGTGGAGCAAGTAAGCGTGCAGGCCCGTAGAGATGAACTGTTTGATCATGTGGTCAAGGCTGTTGTTTCGCAAAACATCAACCTGAAGATGATTCAAGGTCAAATTGCAGATATGTTGGCAGTGAAGCTAGACGATGAGACTGAGGCCGGAAGGGCAGGCCATTTGAAGGAAAGGATAATGAGAGGAAGGAGGATCCTCATATTCTTGGATGATCTCTGGGGGAGAATAGAGTTAGCAAAAATAGGAGTTCCTAGTGGCAGGGACCTTGAAGCTTGCAAATCGAAAATCATATTGACCACAAGGCTGGAGAATGTGTGCCATGCCATGGAAAGCCAAGCAAAAGTCCCTCTTCATATCCTCTCTGAGCAGGATTCTTGGAGGTTGTTTAGGAAGAAAGCAGGAAATGCGGTCGATTCCCCTGATTTCCATGACGTAGCATGGAGGGTTGTCAAAGAATGTGGGGGTCTCCCAATTGCTCTAGTAGTAGTTGCAAGAGCACTGGGGGACAAGGACCTGGAAGAATGGAAAGAGGCTGCTCGACAACTTGAAATGTCGAATCCTACAAAAGATGATCATGATCACACGGTTTTCAGATGTATAAAGTTTAGCTATGATTACTTGAAACATGAAGACGCCAAGCGGTGCTTTTTGAATTGTTGCCTGTTCCCGGAGGACACCAATATCAACATCGAAGACTTGGTGAAGTATGGGATCGGGCAAGGGTTGTTTCAAAATGCTAATACAGTGGAAGAAGCAAGGGCTGCAGCAAGTTCCCTCCTCAAACATCTTAAAGCTTGCAGTTTGCTGTTAAACAGCGATCAAGAGGGGTGCGTGAAAATGCATGATGTTGTCCGGGACACCGCCATATCAATTGCTTCAGCTGGAGATGAACTTGCCTTTCTTGTGCACTCTGGTGCTGCCTTAAAGAAGTGGCCAAGGAGGGACAGCTATGAGGCCTACACAGCCATCTCACTCATGTCCAATGAAATCCAGGATCTCCCTGATGGCCTAGTATGCCCGAAACTCCAGACACTGTTGTTGCAGAATAACATTGACATTCAAGAGATTCCTGATGGCTTTTTTGAAAGGATGGAATCTCTAAGGGTCTTGGATGTGAACGGTGCGGATATCTCATCACTACCCTCGTCACTTGGGCTTCTGCTGAACCTTAGGACGCTTTGTTTAGATGGATGCAAGTCAACAGACATATCGATACTTGGAGAGTTGAGAAAACTTGAGATTCTCAGCCTCAGAGAATCCTGTATTGAGGAGTTGCCCGAAGAAATAGGAAAATTAGTCAGCCTAAGGATGTTGGATTTCACCATGAGTAGCGACCTCAAAAGAATTCGAAGTAACTTGTTATTAAGCTTGTCCCAGTTAGAAGAAATCTACCTGCAGGGTAGTTTTGGAGACTGGGGGAAGCCGATTGAAGGGATGGACCAAGAAACAAATGCAGGGTTCGATGAGTTGACACGGTTGCCTTACTTAAACACTTTGAAGGTGGACATAACAGATGCTGGATGCATTCCACAAACTGTTGTATCCAATCCAAACTGGGTAAAATTCAACATATGCATGAGCGAGGACTTATTCGTGCGGCTCATGGATGTGCATTTGTCAAAAATCATGGCTGCTCGTTCAAGAGCCTTGATTCTCAACACAACCATCAACACCTTGCCAGATTGGTTTAACAGCGTGGTGACTGAGAAAACCGAGAAACTGTTCTACATACATGGCAGTGGTTTACATAACATTATTTCAGAGTATGATCAAGGTAGGCTAAATGGCCTCAAGTCTCTCCTTGTTCAGAGTTGCTATGGGATAGTGCAGCTCATGAATACGGACATACATGTTTTAAATAGACCGGTTTTTGACAACCTTGAAGAGCTGCGTGTCCACAATATGGATTACTTGAAAGTGATGTGCGTTGGTGAACTACCACCCGGTTCATTGCGGAAACTGAAGTTTTTTCAGGTGGAACAGTGTGATGAGTTGGTTGGTACACTGCTGCAGCCAAATTTGTTGAAAAGACTAGAGAATTTGGAAGTTCTTGATGTGAGTGGCAATAGTTTGGAAGACATCTTTAGGTCTGAAGGGCTCGGGAAAGAACAAATCTTGTTGAGAAAATTGAGGGAAATGAAGTTAGATAAGCTGCCTCAGCTGAAGAACATTTGGAATGGTCCTGCTGAACTAGCAATCTTCAACAAGCTCAAGATTTTAACTGTGATTGCGTGCAAGAAATTAAGAAATCTCTTTGCCATCACCGTGTCTCGATGTCTTCTGCAACTTGAAGAGTTATGGATCGAGGATTGTGGTGGTTTAGAGGTAATAATTGGAGAAGATAAGGGAGAAGCATCCAGTAACATGTCCCATAAATCAAGAGTGAAGGAGATTGTTGAAAAACAGAAGGAAGAAGCAATGGAGAAGATCATCTTACCGCAATTGAAGAATTTATCTCTGCAAAATCTTCCACTGCTCACAGGCTTCTACTCCGGATTTGCAAGTATTCAATGCCCATCCTTGGAACAACTGCACACGCAGGATTGCCCGCTTTTTAGAGTTACCACAGATGAATTTCACAGCAGAAAGCAAGTCCAAGTAAATAACGAGCAGCATTTTCTCCTCCTCCGCAAAAGGCTTTGGGAGCTGAGACAATTTTCGTAA 3228 0.4427 MDIVTFIWGVGTKLWGPVTHQIGYLVHYKKNLENLKAQVEALEALRKDNQESVRAAEMNGEEIKAQVQIWLKGADAAIVEVEKVIDDFKLNKRCFWGCCPDCTSRYKLSRKAVKDAVTIGELQDKGKFDRVSLQIRKPLEIESMISTGDFEAFESTQQAMNEVMKALRDDNVNVIGVYGMGGVGKTTMVEQVSVQARRDELFDHVVKAVVSQNINLKMIQGQIADMLAVKLDDETEAGRAGHLKERIMRGRRILIFLDDLWGRIELAKIGVPSGRDLEACKSKIILTTRLENVCHAMESQAKVPLHILSEQDSWRLFRKKAGNAVDSPDFHDVAWRVVKECGGLPIALVVVARALGDKDLEEWKEAARQLEMSNPTKDDHDHTVFRCIKFSYDYLKHEDAKRCFLNCCLFPEDTNINIEDLVKYGIGQGLFQNANTVEEARAAASSLLKHLKACSLLLNSDQEGCVKMHDVVRDTAISIASAGDELAFLVHSGAALKKWPRRDSYEAYTAISLMSNEIQDLPDGLVCPKLQTLLLQNNIDIQEIPDGFFERMESLRVLDVNGADISSLPSSLGLLLNLRTLCLDGCKSTDISILGELRKLEILSLRESCIEELPEEIGKLVSLRMLDFTMSSDLKRIRSNLLLSLSQLEEIYLQGSFGDWGKPIEGMDQETNAGFDELTRLPYLNTLKVDITDAGCIPQTVVSNPNWVKFNICMSEDLFVRLMDVHLSKIMAARSRALILNTTINTLPDWFNSVVTEKTEKLFYIHGSGLHNIISEYDQGRLNGLKSLLVQSCYGIVQLMNTDIHVLNRPVFDNLEELRVHNMDYLKVMCVGELPPGSLRKLKFFQVEQCDELVGTLLQPNLLKRLENLEVLDVSGNSLEDIFRSEGLGKEQILLRKLREMKLDKLPQLKNIWNGPAELAIFNKLKILTVIACKKLRNLFAITVSRCLLQLEELWIEDCGGLEVIIGEDKGEASSNMSHKSRVKEIVEKQKEEAMEKIILPQLKNLSLQNLPLLTGFYSGFASIQCPSLEQLHTQDCPLFRVTTDEFHSRKQVQVNNEQHFLLLRKRLWELRQFS* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1082 1075 ProSiteProfiles Leucine-rich repeat profile. 868 889 IPR001611 GO:0005515
Vvi11g1082 1075 Gene3D - 307 391 IPR042197 -
Vvi11g1082 1075 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 864 1038 - -
Vvi11g1082 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 407 IPR027417 -
Vvi11g1082 1075 Pfam NB-ARC domain 157 393 IPR002182 GO:0043531
Vvi11g1082 1075 SMART LRR_typ_2 866 885 IPR003591 -
Vvi11g1082 1075 SMART LRR_typ_2 552 575 IPR003591 -
Vvi11g1082 1075 SMART LRR_typ_2 597 620 IPR003591 -
Vvi11g1082 1075 SMART LRR_typ_2 527 551 IPR003591 -
Vvi11g1082 1075 Gene3D - 141 303 IPR027417 -
Vvi11g1082 1075 Gene3D - 392 475 IPR036388 -
Vvi11g1082 1075 SUPERFAMILY L domain-like 727 1049 - -
Vvi11g1082 1075 Gene3D Ribonuclease Inhibitor 476 716 IPR032675 -
Vvi11g1082 1075 FunFam Probable disease resistance protein At1g61300 142 302 - -
Vvi11g1082 1075 Gene3D Ribonuclease Inhibitor 761 1067 IPR032675 -
Vvi11g1082 1075 FunFam Probable disease resistance protein At1g63360 392 478 - -
Vvi11g1082 1075 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Vvi11g1082 1075 Coils Coil 25 59 - -
Vvi11g1082 1075 PRINTS Disease resistance protein signature 341 355 - -
Vvi11g1082 1075 PRINTS Disease resistance protein signature 247 261 - -
Vvi11g1082 1075 PRINTS Disease resistance protein signature 174 189 - -
Vvi11g1082 1075 PRINTS Disease resistance protein signature 864 880 - -
Vvi11g1082 1075 SUPERFAMILY L domain-like 467 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1082 Vvi-Chr11 17451406 17454789 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1082 171 479 WRKY Transcription Factor Family AT5G45050 25.000 5.93e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1082 - K13459 vvi:104880791 2085.84