Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1076 ATGGCTTTGGAGATTGTGTGTTTCGTTATCCATGTTGGGGAGAGGCTGTGGTCTTCAGCGACTGGTCCAGTGAGTAATCTGGTGAACTATAGGAAAAATATAAAGAATCTCAATGATGAAGTTGAGAAGCTAGAGATTATCAGAAGCGATAATCGACTTTCAGAGAGGGCCGCCCAGATGAATGGAGAAGAAATCAAAGGCGAGGTTCAGATGTGGCTGAACAAATCTGACGCTGTCCGCAGAGGGGTTGAGAGATTGAATGGTGAAGTCGACATGAACAGGACATGCTTCGGTGGGTGCTGTCCTGATTGGATATCGCGTTACAAGTTAAGCAAGCAAGCCAAGAAAGATGCACATACTGTTAGGGGGCTCCAAGGGACGGGAAGATTTGAAAGGGTTTCGCTCCCAGGACGACGGCAACTGGGAATCGAGTCGACGCTGTCATTTGGGGATTTTCAGGCATTTGAATCGACCAAAAGGGCGATGGATGAGGTCATGGTGGCCTTGAAAGAAGATCGGGTGAATATTATTGGGGTCTATGGAATGGGGGGTGTGGGCAAAACAACCATGGTGAAACAGGTGGGTGCAAATGCTCACAGAGATGGGCTGTTTCAGCATGTTGCAATGGCTGTGATATCCCAGAATCCGGATTTGAGGAAAATTCAAGCCCAAATTGCAGATATGTTGAACTTGAAGCTAGAAGAGGAGAGTGAAGCTGGGAGGGCAGCAAGGTTGAGGGAGAGGATAATGAGAGGCAAGAGTGTTCTCATAATCTTAGATGACATATGGAGAAGAATTGACTTATCTGAGATAGGAATTCCCAGTACTGGCAGTGACCTTGATGCCTGCAAATCCAAAATCTTACTGACCACAAGGCTTGAAAATGTGTGTCATGTCATGGAAAGCCAAGCAAAAGTCCCTCTGAATATTCTGTCTGAACAGGATTCTTGGACCTTGTTTGGGAGGAAAGCAGGGAGAGTAGTGGATTCTCCTGATTTTCATAATGTAGCACAGAAGATTGTCAAAGAATGTGGAGGCCTCCCAATTGCTCTGGTGGTTGTTGCTAGAGCATTAGGCGATAAGGACTTGGATGAATGGAAAGAAGCTGCAAGACAACTAGAAATGTCCAAGCCAACAAACCTGGATGATGATGGGGGTGTTTTCAAATGTATAAAACTGAGCTATGACTATTTGAAAGGCAATAGCACCAAACCATGTTTTCTGATTTGTTGTTTGTTTCCAGAGGACACGGACATCAGCATCGAAGACTTGGTGAAGTACGGATTGGGGCAAGGGCTGTTTCAAGAGGCCAACACAATCGAAGAGGCAAGAGGCAGAGCACGTTCTGTTGTCAAGTACCTCAAGGCTTGCAGTCTGTTGTTGGACAGCACAGAGGAGGGCGGTGTGAAAATGCATGACGTTGTCCGCGATATGGCTATACTACTCGTATCATCTGAAGACAATAATGCCTTTATGGTGCAATCTGGTAGCGCCTTAAAGGTGTGGCCGACAAAGGACAGCTATGAAGCCTACACAGCCATCTCACTCATGTCCAACGAAATCGAGGAGCTCCCTGATGGGCTAGTATGCCCCAAGCTTCAGACATTGTTATTACAGAATAACAATGATATACAAGAGATCCCAGATGACTTTTTTGGAAGCTTCCACTCCCTGAGAGTCTTAGACCTCAATGGTGCTGACATCCCATCACTACCCCCTTCGCTTGGACTCCTGAGAAGCCTTAGGACGCTATGCCTAGACTGCTGCCAGTCAATAACAGACATATCCATACTGGGGAAATTGGAGAAACTTGAGATTCTTAGTCTCAGAGAATCCTACATTGAGGATTTGCCAGAAGAACTGGCCCAGCTGGCCAATCTGAGGATGCTGGATTTCACTATGAGTAACAACATCAAATCAATTCCTCCTAAAGTGATATCAAGCTTGTCCAGGTTAGAAGAGATGTACATGCAGGGTAGCTTCGCAGACTGGGGTCTGCTGCTTGAAGGAACATCATCAGGAGCCAACGCCGGTTTTGATGAGCTAACGTGCTTGCATCGCTTAAATATCTTGAAGGTAGACATCTCTGATGCTGAGTGCATGCCTAAAACTGTGAGGTTTGATCCAAACTGGGTAAACTTTGATATATGCATAAGCAGGAAGCTGTTCACCCGGTTCATGAATGTGCATCTGTCAAGAGTTACAGCTGCTCGATCAAGAGCCTTGATTCTCGATGTCACCATCAATACCTTGCCAGACTGGTTCAACAAAGTGGCCACTGAAAGAACCGAGAAACTATACTACATAGAATGCAGGGGTCTAGACAACATTCTTATGGAATATGATCAAGGAAGCTTAAATGGCCTCAAGATCCTCCTTGTCCAGAGTTGCCATCAGATAGTACACCTCATGGATGCAGTAACATATGTTCCAAACAGACCTTTGTTCCCTAGCTTGGAAGAGCTGCGTGTTCACAATCTTGACTACTTGAAAGAGATCTGCATTGGGCAACTTCCGCCTGGATCGTTGGGGAACATGAAGTTCTTGCAGGTGGAGCAGTGCAATGAGCTGGTGAATGGGCTGCTGCCGGCTAATCTGTTGCGGAGACTAGAGAGTCTGGAAGTCCTTGATGTGAGTGGGAGCTATTTGGAAGACATATTTAGGACTGAAGGACTCAGGGAAGGAGAAGTTGTGGTGGGAAAGCTGAGAGAACTGAAACTGGATAATCTACCTGAACTGAAGAATATATGGAATGGCCCTACCCAGCTTGCAATATTCCACAATCTGAAGATTTTGACAGTGATAAAGTGCAAGAAACTGAGGAATCTATTCACATACAGTGTGGCTCAAAGTCTCAGATATCTGGAGGAGCTGTGGATTGAGTATTGCAATGGTTTGGAGGGAGTTATTGGGATGCATGAGGGTGGAGATGTAGTGGAGAGGATCATTTTCCAGAACTTGAAGAACTTGTCCTTGCAAAATCTTCCAGTGCTCAGAAGCTTTTATGAAGGAGATGCAAGAATTGAATGCCCATCCTTGGAACAACTGCATGTGCAGGGCTGCCCAACATTTAGGAATTACTCACCTTATTTCCACAGTACAAACCAATTCCAAGTAAACAATGAACAACACTTGCTCCTCCTGCGAAAAAGGTTGTGGGAGCAGAGAACTTTCCTAGAAGAAAATTTATGA 3192 0.4546 MALEIVCFVIHVGERLWSSATGPVSNLVNYRKNIKNLNDEVEKLEIIRSDNRLSERAAQMNGEEIKGEVQMWLNKSDAVRRGVERLNGEVDMNRTCFGGCCPDWISRYKLSKQAKKDAHTVRGLQGTGRFERVSLPGRRQLGIESTLSFGDFQAFESTKRAMDEVMVALKEDRVNIIGVYGMGGVGKTTMVKQVGANAHRDGLFQHVAMAVISQNPDLRKIQAQIADMLNLKLEEESEAGRAARLRERIMRGKSVLIILDDIWRRIDLSEIGIPSTGSDLDACKSKILLTTRLENVCHVMESQAKVPLNILSEQDSWTLFGRKAGRVVDSPDFHNVAQKIVKECGGLPIALVVVARALGDKDLDEWKEAARQLEMSKPTNLDDDGGVFKCIKLSYDYLKGNSTKPCFLICCLFPEDTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDVVRDMAILLVSSEDNNAFMVQSGSALKVWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQTLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITDISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEEMYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNFDICISRKLFTRFMNVHLSRVTAARSRALILDVTINTLPDWFNKVATERTEKLYYIECRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAVTYVPNRPLFPSLEELRVHNLDYLKEICIGQLPPGSLGNMKFLQVEQCNELVNGLLPANLLRRLESLEVLDVSGSYLEDIFRTEGLREGEVVVGKLRELKLDNLPELKNIWNGPTQLAIFHNLKILTVIKCKKLRNLFTYSVAQSLRYLEELWIEYCNGLEGVIGMHEGGDVVERIIFQNLKNLSLQNLPVLRSFYEGDARIECPSLEQLHVQGCPTFRNYSPYFHSTNQFQVNNEQHLLLLRKRLWEQRTFLEENL* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1076 1063 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 874 1026 - -
Vvi11g1076 1063 Coils Coil 218 238 - -
Vvi11g1076 1063 Gene3D Ribonuclease Inhibitor 948 1044 IPR032675 -
Vvi11g1076 1063 Gene3D Ribonuclease Inhibitor 746 947 IPR032675 -
Vvi11g1076 1063 Pfam NB-ARC domain 160 396 IPR002182 GO:0043531
Vvi11g1076 1063 Gene3D - 149 306 IPR027417 -
Vvi11g1076 1063 Gene3D - 311 393 IPR042197 -
Vvi11g1076 1063 PRINTS Disease resistance protein signature 176 191 - -
Vvi11g1076 1063 PRINTS Disease resistance protein signature 249 263 - -
Vvi11g1076 1063 PRINTS Disease resistance protein signature 344 358 - -
Vvi11g1076 1063 PRINTS Disease resistance protein signature 622 638 - -
Vvi11g1076 1063 FunFam Probable disease resistance protein At1g61300 152 305 - -
Vvi11g1076 1063 SMART AAA_5 173 379 IPR003593 GO:0016887
Vvi11g1076 1063 SMART LRR_typ_2 624 648 IPR003591 -
Vvi11g1076 1063 SMART LRR_typ_2 601 623 IPR003591 -
Vvi11g1076 1063 SMART LRR_typ_2 530 554 IPR003591 -
Vvi11g1076 1063 SMART LRR_typ_2 555 578 IPR003591 -
Vvi11g1076 1063 Coils Coil 27 47 - -
Vvi11g1076 1063 Gene3D Ribonuclease Inhibitor 483 716 IPR032675 -
Vvi11g1076 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 410 IPR027417 -
Vvi11g1076 1063 SUPERFAMILY L domain-like 470 697 - -
Vvi11g1076 1063 Gene3D - 394 480 IPR036388 -
Vvi11g1076 1063 Pfam Leucine rich repeat 531 587 IPR001611 GO:0005515
Vvi11g1076 1063 SUPERFAMILY RNI-like 769 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1076 Vvi-Chr11 17366282 17380527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1076 164 660 WRKY Transcription Factor Family AT5G45050 22.966 1.03e-08 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1076 - K13459 vvi:104880792 2091.23