Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1066 ATGGACAACACAGAGGAGTTCAAAAACTATTGGGAAACCAATATGTTTCTCCAAAGTGAAGAGTTCGACAGTTGGGGGGGCCTGGATGAGGCGTTTTCCGGCTACTACGATTCGAGTTCGCCGGACGGCGCAGCGTCGTCGGCGGCGTCGAAGAACATAGTTTCGGAGCGGAACAGGAGGAAGAAGCTGAACGAGAGGTTGTTCGCACTGAGAGCGGTGGTCCCCAATATCAGTAAGATGGATAAGGCGTCGATAATTAAAGATGCGATCGACTATATCCAAGACTTGCACGAGCAAGAGAGGAGAATTCAGGCCGAGATATCGGAGTTGGAGTCCGGAAAATCGAAGAAGAGTCCGCCGGGGTACGAATTCGACCAGGAGATTCCGGTGTTGGTATCGAAATCGAAGAAGAAGAGGACTCAGCACTGCTATGATTCCGGTGGATCAAGAGTTTCCCCAATCGAGGTCCTTGAGCTGAGGGTCGTTTACATGGGAGAAAAGACCGTGGTTGTGAGCCTCACATGTAGTAAAAGAACAGACACAATGGTAAAGCTGTGTGAAGTATTCGAATCTCTGAAGCTTAAAATCATTACAGCCAACATTACTGCTTTCTCTGGCAGGCTTTTGAAGACTGTTTTCGTTGAGGCAGATGAGGAGGAGAAAGATGTTCTAAAAATAAAGATTGAAACAGCCATAGCAGCTCTCAATGATCCACAGAGTCCTATGAGTATATGA 735 0.4748 MDNTEEFKNYWETNMFLQSEEFDSWGGLDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIQDLHEQERRIQAEISELESGKSKKSPPGYEFDQEIPVLVSKSKKKRTQHCYDSGGSRVSPIEVLELRVVYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITAFSGRLLKTVFVEADEEEKDVLKIKIETAIAALNDPQSPMSI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1066 244 Coils Coil 93 113 - -
Vvi11g1066 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Vvi11g1066 244 SMART finulus 53 102 IPR011598 GO:0046983
Vvi11g1066 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 115 - -
Vvi11g1066 244 Pfam Helix-loop-helix DNA-binding domain 54 96 IPR011598 GO:0046983
Vvi11g1066 244 Gene3D - 44 113 IPR036638 GO:0046983
Vvi11g1066 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 229 - -
Vvi11g1066 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1066 Vvi-Chr11 17038653 17041492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1066 5 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.380 4.91e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi11g1066 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1066 - - vvi:100244514 473.011