Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1063 ATGTGCGAAGAAACCAAGTTCAGTGTTCTGTGCAGCCTCTTCACATGGATTCAGAGGAGCAGAACCTCCGCCAAGAAGCGTTCCAAGTTCCGCATATTCCTCGACACCTTTTGCATAAACGGCCACCAGTTCAGCGCCATACGATTGATCCTCCCCAACCTCGACCGCGAGAGGGGCTCCTACGGACTCAAGGAGTCCGTGCTCGCCACTTGCCTCATTGACGCCCTCGGCATGTCCAGGGAGTCCGAGGACGCCCTTCGCCTCATCAACTGGCGAAAAGGGGGTGCTAAAACCGGCGCCAATGCTGGAAATTTTGCCATGGTCGCGGCTGAAGTGCTGCAGCGTCGGCAAGGAATGACTTCTGGTGGACTGACAATCAAGGAGTTGAATGATTTGCTTGATTGTTTAGCTTCAAGTGAAAATAGAACAGAGAAGACTTCAGTCCTTTCTACCCTGATCAAGAAAACAAACGCACAGGAAATGAAGTGGATTGTCATGATAATTCTGAAAGACCTGAAGTTGGGAATCAGTGAAAAAAGCATCTTCCATGAATTCCATCCGGATGCAGAGGACTTGTTTAATGTCACATGCGACTTGAAACTTGTTTGTGAAAAGCTCAAGGATCGAAGTCAAAGGCATAAACGCCAGGATATTGAAGTTGGAAAAGCTGTGCGACCCCAACTAGCTATGAGGGTTGCTGATGCAACTGCAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAGTTTGATGGTGACCGCATCCAAATTCATAAGAATGGAGAAGAAATACACTTCTTCTCAAGGAACTTCCTTGATCACCCTGAATATAAATATGCAATGTCAAACATTGTTGCACAAAATCTTTTGGTTGATAGGTGTATACTTGATGGTGAAATGTTGGTATGGGACATATCGCTGAATCGTTTTGCTGAGTTTGGTTCAAATCAGGAAATAGCAAAGGCAGCAAAGGAGGGGCTTGACAGTGATCGGCAGGTTCTCTCCTATGTTGCTTTCGACATTCTTTATGTTGGAGATACTAGTGTCATTCACCAAACCTTGAAGGAACGGCATGAGCTTTTGCAGAAAGTCGTGAAGCCTTTGAAGGGTCGTTTTGAAATCTTAGTACCTTCTGGTGGTCTTAATACTCACCGTCCTTCTGGGGAACCATGTTGGTCACTTATTGCTTATGATGTGGATGATGTCGAGAGGTTCTTCAAGAAAACTGTTGAAAATAGAGATGAAGGCATTGTTTTAAAAGACCTTGGTTCAAAATGGGAGCCAAGTGACAGGAGTGGAAAGTGGTTAAAGTTGAAGCCTGAGTATGTTCATGCAGGTTCTGACCTTGATGTTCTTATAATAGGAGGGTATTATGGTTCTGGGCGTCGTGGAGGAGAGGTAGCTCAATTCTTGGTGGGCCTTGCTGACCATTCAGGCCCTGACACATATCCCAGACGATTCATTTCCTTTTGCAGAGTGGGTACTGGACTTTCTGATGACGAGCTTGATGCTGTTGTAACAAAATTGAAGCCTTATTTCAGGAAAAATGAATACCCAAAAAAGGCACCACCAAGCTTTTATCAAGTCACAAATAATTCAAAAGAGAGACCAGACATTTGGATTGATAGCCCTGAAAAATCAATTATACTTTCTATTACTAGTGATATCCGAACAATAAGGTCTGAGGTATTTGCTGCACCATACAGCCTGAGGTTCCCACGCATTGATTGTGTGAGATATGACAAGCCTTGGCATGAATGCCTTGATGTGCAATCTTTTATGGAATTGGTACATTCAAGCAATGGTACCACGCAGAGAGGGGCAGATTATGGGCGCATGCAAGATAGTAAACCAAAGCGCATGAAATCCTCTAAGAAAGGAGAGCAAAAGACTGCTCATGTTGTTCCTTCTCATTTTATGCAGACTGATGTTACCAATGTCAAGGGCGAAACGCTAATATTTTCGAACATGATGTTTTACTTTGTTAATACACCTCCAACCCATTCTCTTGATTCCTTGCATAAATTGGTGGTTGAGAATGGAGGAACCTTCTCAATGAATCTGAATAATTCAGTTACACATTGTGTTGCAGCTCAAAGTAAAGGTATCAAATATCAGGCAGCAAAGCTTCGTGGAGATATTATTCATTGTTCTTGGGTCTTTGACTGTTGTTCACAGAAAAAGCTCCTTCCTTTACAGCCAAAGTACTTTCTCTTCCTTTCTGAACATTCAAAGAAGAAGTTACAAGAGGAAATTGACAAATTTTCTGACTCCTACTACCAGGATCTTGACATTTCAGACATCAAGCAGCTTTTAAGCAATGTGGATAGGTCAGACAACTCCAAAACTATTGATTACTACAAGAACAAATATTGTCCAAAGGAAAAGTGGTCGCGCTTTCATGATTGCTGCATTTGCTTCCACTCCTCAATACAGTCTTCTAATTCGGATTGGGAACTTCTGTCAAAACTTGCGCTGAGGAGGATGAAGCTTGAAGTTTCCATGGGTGGTGGTAAAGTTGGCAATAATCTTTCTCAGGCCACCCATTTAGTGGTCTTTTCAGTACCAGGATTTGATTTGGACTTCAGTGACATAATGGAAAGTTTCTCACCAGCAGAGAAACATCTTCTATGTAATAAAAAGTTGCATGTTGTTGGGTATCAATGGTTAGAAGGCTGCTTGGAGGAGGGCCGGAGGTTGCAAGAACAGAAATATAGCCTGAAACCTGAGGGCTTGGAAGAGTCAAACTTTGGAGAATGCAAACATGATATAGATGTAGAAGCCCCTTCTGTTTTGGACAGTGTGGAGAACCAAAATTTGGTGTCTTTTCCAGACAAAGAAGGGAAACAAGGTAGAGGAAAAGCTCCTCCAGAAAGCATTAGTATCTTGGCCTCGCCCAAGAGGGACGAGAAAAGGAAAAGAGGAAGGCCTGCTGGCCCAAGCACAAAGAAAGGAAAAGCAGGTTTCAGCCAAGCTCGAAGGACACGGCCCCGGATTGGTAAGCCACCTAAGATATATGAAAACGAATCAGATGCAAGCGATTCAGGTGAAAAAATGGAAGAGGAAGGGACCAAAATGGGAGGGAATCATGCAATCCATGGAGTCGAATGCAAGGAATGTCCAGAAATCCAAGAGACTGAAATAGTAGAAGATTCTGAATCATCACAAAGAGGAAAGACAGAAGAAAAGGAGGTTGCACTAGATAATGTACGTGAAAAATGGTTAGATAGAGCACAGGACATTGAACTGGATAGTGAAAATAAGGTTGACAACAGTAAAAAGACTGAGAAGCTGGAAGTTATGGTTGATCCAGTTCAAGCCATGCTACTAGACATGATACCGAGCCTTGGAGTGAAAAAGGCGGAAAGTACAAATCCTATTATTGATGATGAGAAGCCTCCAGTAGAGCAGGGTGCAGAACCTGTGAAGAAAAAGAAAGTCAGCTACAAGGATGTCGCTGGAGCACTGCTGAAGGATTGGTGA 3492 0.4327 MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWKKLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILDGEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQVLSYVAFDILYVGDTSVIHQTLKERHELLQKVVKPLKGRFEILVPSGGLNTHRPSGEPCWSLIAYDVDDVERFFKKTVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADHSGPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYPKKAPPSFYQVTNNSKERPDIWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVRYDKPWHECLDVQSFMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETLIFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRGDIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGRRLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPESISILASPKRDEKRKRGRPAGPSTKKGKAGFSQARRTRPRIGKPPKIYENESDASDSGEKMEEEGTKMGGNHAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEPVKKKKVSYKDVAGALLKDW* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1063 1163 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi11g1063 1163 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Vvi11g1063 1163 MobiDBLite consensus disorder prediction 1003 1030 - -
Vvi11g1063 1163 FunFam DNA ligase 799 910 - -
Vvi11g1063 1163 FunFam DNA ligase 667 781 - -
Vvi11g1063 1163 MobiDBLite consensus disorder prediction 605 635 - -
Vvi11g1063 1163 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 100 206 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi11g1063 1163 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Vvi11g1063 1163 MobiDBLite consensus disorder prediction 944 1036 - -
Vvi11g1063 1163 FunFam DNA ligase 445 606 - -
Vvi11g1063 1163 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Vvi11g1063 1163 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Vvi11g1063 1163 MobiDBLite consensus disorder prediction 1127 1147 - -
Vvi11g1063 1163 Gene3D BRCT domain 665 781 IPR036420 -
Vvi11g1063 1163 FunFam DNA ligase 220 444 - -
Vvi11g1063 1163 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi11g1063 1163 PANTHER DNA LIGASE 4 4 1156 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vvi11g1063 1163 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Vvi11g1063 1163 Pfam ATP dependent DNA ligase domain 226 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vvi11g1063 1163 SUPERFAMILY BRCT domain 788 911 IPR036420 -
Vvi11g1063 1163 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Vvi11g1063 1163 Gene3D DNA ligase/mRNA capping enzyme 220 444 - -
Vvi11g1063 1163 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vvi11g1063 1163 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Vvi11g1063 1163 NCBIfam ATP-dependent DNA ligase 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vvi11g1063 1163 Gene3D BRCT domain 799 910 IPR036420 -
Vvi11g1063 1163 SMART BRCT_7 654 730 IPR001357 -
Vvi11g1063 1163 SMART BRCT_7 807 900 IPR001357 -
Vvi11g1063 1163 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Vvi11g1063 1163 FunFam DNA ligase 1 218 - -
Vvi11g1063 1163 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Vvi11g1063 1163 ProSiteProfiles BRCT domain profile. 840 910 IPR001357 -
Vvi11g1063 1163 Gene3D - 446 606 IPR012340 -
Vvi11g1063 1163 CDD OBF_DNA_ligase_IV 449 593 - -
Vvi11g1063 1163 MobiDBLite consensus disorder prediction 615 635 - -
Vvi11g1063 1163 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1063 214 602 Core DNA Replication Machinery Family AT1G08130 27.228 1.20e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1063 K10777 - vvi:100258105 2323.51