Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1052 ATGTATTCAAAATGTGATAAACATCCTCAGGGTGGATGCAGAAAAGCTGTTCCAATTACAGAGGGAAGAAAGAATGATGATGATTCCTGCTCCTTAAATTTTCCACAAAGTTGTTCCCAGTTATCAACTATCAGTGTCATGTCTGAAGGTTCTGTACCTAATTTTGTATATCAGCGAAGGAAGCTCCGAAGGAAGCACGCCACCATTTTTTCAGCCCAGGCATCAGCAGACACAAAGGCAAGTGCTGGTTGCCTTTCTGCTGTCAGTTCTGAAGCCCCTTCAGTGGCAGCCAAGGATGAAAATGGAGTTCCTCAAGTTGGGCTCGAAACTGAAACTGTTAGAGATCTTGTTATACTTCCAGTTGAATGTAATAGAGAGCCCAAGGCACAATCTATTGATAGATGTTCTGTTAGGGAAGAGCATGGTTCTGATGATGCACCTAAAAATAGCATGAGCAAAGTTAACGAGTTCTACAGTGCAAATGATAGTTGCTCATCATCGAAATCAAATATGGAACTTGGTTCAGCTTCCATGAAGAATGACGTGGATGACACTGCTGAGTGCTCCTCTTCTAGTGTATTGGGTATGGCAACCATGGGAGAAGATATATCAGAAAAGGACCTATGTATATCTGTCCTTAGAAGCGAGGGGCTTCTTAGAGGATGTTTGCCTAGCAGGAGTTGTCCTACTGATGGTGTTAGTTATGGTAGTGATAGCAGGGGTTCCCGGACATGCAAAGTCTGTGGCAAATCAGAAATTTCACTGAAAATTCTAATTTGTGATCATTGTGAAGAGGCATTTCACATGTTTTGTTGTAACCCTTCTATAAAGAAGATACCAGTTGATGAGTGGTTTTGTCACTCTTGTTTGAAAAAGACTCGTAAAATGTTAAAGGAGACAACTATCAGAAGATCTCTGAATATTAATGGTGAAACGAGCAGAAGTAGAAATACAACATGCAAAGGTGAATTAGGTCCTATAGCATTCATGTTGAAGGATACTGGGCCATATACAACCGGAGTTCGAATTGGGAAAGGATTTCAAGCTGAAGTTGCTGACTGGTCAAGTCCAACTGCTAGTGATGTTGATTTTCTTGGTGAACCATTGGACATGGATCCTTCAGGGTGCGTTAATTTGCATGGACAGAATGCTAACCAGCCTTCAAGACTAAGCTCTATAGGTAATTGGCTTCAATGTCGAGAGGTCATAGATGGCTTAGGAGAAGGTGTCAATGGAATCATCTGTGGGAAGTGGCGCAGGGCACCTCTTTTTGAAGTTCAAACTGATGACTGGAGTTGTTTCTGTTGTGTACGTTGGGATCCAGCTCATTCTGATTGTGCTGTACCTCAGGAGCTGGAAACAGATGAAGTTCTAAGGCAATTGAAGTATATGGAGATGCTGAGGCCTCGATTGGTTGCTAAACGGAGAAAAAAATTAGGTCGCACTAAGAGTGGAGGTTCACAAAACCATAAAGAAGATGAAAGAAATACACAAACTCGATAG 1503 0.4185 MYSKCDKHPQGGCRKAVPITEGRKNDDDSCSLNFPQSCSQLSTISVMSEGSVPNFVYQRRKLRRKHATIFSAQASADTKASAGCLSAVSSEAPSVAAKDENGVPQVGLETETVRDLVILPVECNREPKAQSIDRCSVREEHGSDDAPKNSMSKVNEFYSANDSCSSSKSNMELGSASMKNDVDDTAECSSSSVLGMATMGEDISEKDLCISVLRSEGLLRGCLPSRSCPTDGVSYGSDSRGSRTCKVCGKSEISLKILICDHCEEAFHMFCCNPSIKKIPVDEWFCHSCLKKTRKMLKETTIRRSLNINGETSRSRNTTCKGELGPIAFMLKDTGPYTTGVRIGKGFQAEVADWSSPTASDVDFLGEPLDMDPSGCVNLHGQNANQPSRLSSIGNWLQCREVIDGLGEGVNGIICGKWRRAPLFEVQTDDWSCFCCVRWDPAHSDCAVPQELETDEVLRQLKYMEMLRPRLVAKRRKKLGRTKSGGSQNHKEDERNTQTR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1052 500 SMART PHD_3 244 290 IPR001965 -
Vvi11g1052 500 SUPERFAMILY FYVE/PHD zinc finger 233 296 IPR011011 -
Vvi11g1052 500 ProSiteProfiles Zinc finger PHD-type profile. 242 292 IPR019787 -
Vvi11g1052 500 ProSitePatterns Zinc finger PHD-type signature. 245 289 IPR019786 -
Vvi11g1052 500 Pfam PHD-finger 245 291 IPR019787 -
Vvi11g1052 500 MobiDBLite consensus disorder prediction 485 500 - -
Vvi11g1052 500 MobiDBLite consensus disorder prediction 1 26 - -
Vvi11g1052 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 314 IPR013083 -
Vvi11g1052 500 FunFam RING/FYVE/PHD zinc finger superfamily protein 234 311 - -
Vvi11g1052 500 FunFam uncharacterized protein LOC106759733 isoform X4 394 463 - -
Vvi11g1052 500 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 237 305 IPR047171 GO:0006338
Vvi11g1052 500 Gene3D - 394 463 - -
Vvi11g1052 500 ProSiteProfiles Zinc finger CW-type profile. 390 454 IPR011124 GO:0008270
Vvi11g1052 500 MobiDBLite consensus disorder prediction 474 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1052 Vvi-Chr11 16774795 16789387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1052 244 315 C2H2 Transcription Factor Family AT3G01460 32.051 3.61e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi11g1052 PHD 1.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1052 - - vvi:100267421 1016.91