Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1051 ATGCGTGGAACTGGAAAGAAAGCAGGACATCAGGAATCTGGAAAGTCTTGCTTTCCTAAAAGAAATATCGGGCCTAAGCTGAATGCAGCATTGCAGATTAAAAATGGTAGTAAAATATCTCAGACCAGGAAATGCAAGCCAAAATCAAAATCTCATGCAAAGACAATTGGTGCAATCCTGTCTAAGAGAACAACTACTGGCTCTCCAAGCAAGGGAAGCAGGAGTGGATCCACAACCAGAAAACTGATTCACAAGAAAACCCTGCATAAAGCCATTGATACTGAGTCTTCCAAGAAGGAGTCTTCATCAAAGCTTAAAGGTGAGAAGCCCCCACAAATTAGCACAAACAAAAATGGGGAAACTGTGGACAAAAATGTTAAACCTCAAAAATTAAAGAAAAGAGGAAAGCGGAAGCGGCGAAAGGATAATTCAGAGCTAGATGAAGCTTCTCGCTTGCAAAGAAGAACCAGGTACCTCTTGATCAAAATGAAACTGGAGCAGAATCTTATTGATGCTTACTCTGGGGAAGGTTGGAAAGGTCATAGTCGAGAAAAGATCAGGCCAGAGAAGGAACTACAAAGAGCTACGAAGCAAATATTGAAATGTAAACTTGGGATCCGTGATGCAATTCGCCAGCTGGAGTCACTGAGCTCCATAGGATGTATTGAAGATACTGCAATTGCTTCAGATGGATCTGTTTATCATGAACACATAATCTGTGCAAAGTGCAAGTTGCGGGAGGCTTTCCCAGATAATGATATTATACTCTGTGATGGGACGTGCAATTGTGCTTTCCACCAGAAATGTCTTGATCCTCCATTGGAAACTGAAAATATTCCTCCGGGAGACCAAGGTTGGTTTTGCAAGTTCTGCGAGTGTAAGATGGAAATACTAGAAGCAATGAATGCACATCTTGGAACCCGCTTCTCTGTGGACAGTACTTGGCAGGATATTTTCAAAGAAGAAGCTGCTTTGCCTGATGGTGGGAGTGCACTGCCCTATCCAGAGGAAGATTGGCCTTCTGATGATTCACAAGATCATGATTATGATCCTGAAAGAAATGAAAATAGCTGCAGCATCAGCACTGCTGGCACTGAAGGAAATGCTTCAGATGATACAAATAGTTCTTTAAGCTTGAGTTGGTCGTTTGAAGACGAAATCCTTTCTGGATCCAAAAGATCAGGGATTATCAGTGCAGATTCTGATGAAACATCTGATTGTGAAATCATAAGTGGTCGTAGGCAACGAAGAGCTGTTGATTATAGAAAGTTATATGATGAAATGTTTGGAAAGGATGCTCATGCAAATGAACAAGTTAGTGAAGATGAAGACTGGGGTCCTGCTAACAAAAGGCGGAGAGAAAAGGAGTCTGATGCAGCCAGCACCCTCATAACTCTATATGAAGGTGAGAAAAAGTTACCTAATGTGGAAACCATGGAAGCCAAACAAAAAATTTCTTCAGATCCACAAACTAAAAGGCCATTTTCCAGAATTCCACTTGATGCGGTTGAGAAGCTTCGCCAAGCATTTGGGGAGAATGAACTTCCCTCTAGAGATGTGAGGGAGAATCTTGCAAAGCAGTTGGGTCTTGATTATGAGAAGGTGAACAAATGGTTCAAAAATGCACGATATATAGCGCTAAAAACAAGAAAGGCAGAAAGAGCAAAACAACTTCAGACTTCTCCCAGAATCTCCAAGGAATCCAGATCAGAAATCGTGAAGGACAAAACTGTTGATCTAGTGGCATCAAGGGATAACTCATCAGCATCACTGGTCCGTGCACTAAAGAATTTGAAAAAGGTGCGGAGGAGAAAAAATCCAAAGCCAATAATAACCAGCCCTGTAAAGAAAAAGCATCATAGAAGGGCTTTACTTGAGTCACCTACAAATGACAAGGTTACTATGGAGTTTGACGATGATGTGAGCTTGAAGAAACAACTGAAGCTTTTGAAAGAAAAAAGTAAGAGGGACAAGCAAAGGGTCGACTTCAAGGAGGGAACTGGTGTACAAGATGCAGAGAAGGAGATGGAGAGACTCTGCCAAATTAAGGATAAGATAGAGAAGTTGAAGCAGGTAATACTGAGACTTCAATGTGACAAAACTAATCAATGGCAAGACCAGTCAGTGATCTATGTTCCTGTGGCAGAGCTAAGGGAGAAAGGTCGATTTTGCATCACATCTTGA 2184 0.4158 MRGTGKKAGHQESGKSCFPKRNIGPKLNAALQIKNGSKISQTRKCKPKSKSHAKTIGAILSKRTTTGSPSKGSRSGSTTRKLIHKKTLHKAIDTESSKKESSSKLKGEKPPQISTNKNGETVDKNVKPQKLKKRGKRKRRKDNSELDEASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGHSREKIRPEKELQRATKQILKCKLGIRDAIRQLESLSSIGCIEDTAIASDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLETENIPPGDQGWFCKFCECKMEILEAMNAHLGTRFSVDSTWQDIFKEEAALPDGGSALPYPEEDWPSDDSQDHDYDPERNENSCSISTAGTEGNASDDTNSSLSLSWSFEDEILSGSKRSGIISADSDETSDCEIISGRRQRRAVDYRKLYDEMFGKDAHANEQVSEDEDWGPANKRRREKESDAASTLITLYEGEKKLPNVETMEAKQKISSDPQTKRPFSRIPLDAVEKLRQAFGENELPSRDVRENLAKQLGLDYEKVNKWFKNARYIALKTRKAERAKQLQTSPRISKESRSEIVKDKTVDLVASRDNSSASLVRALKNLKKVRRRKNPKPIITSPVKKKHHRRALLESPTNDKVTMEFDDDVSLKKQLKLLKEKSKRDKQRVDFKEGTGVQDAEKEMERLCQIKDKIEKLKQVILRLQCDKTNQWQDQSVIYVPVAELREKGRFCITS* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1051 727 CDD homeodomain 492 544 IPR001356 GO:0003677
Vvi11g1051 727 MobiDBLite consensus disorder prediction 107 122 - -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 88 106 - -
Vvi11g1051 727 SUPERFAMILY FYVE/PHD zinc finger 229 297 IPR011011 -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 355 376 - -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 326 376 - -
Vvi11g1051 727 Coils Coil 669 689 - -
Vvi11g1051 727 ProSiteProfiles 'Homeobox' domain profile. 489 549 IPR001356 GO:0003677
Vvi11g1051 727 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Vvi11g1051 727 CDD PHD_PRHA_like 240 291 IPR045876 -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 58 77 - -
Vvi11g1051 727 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 17 720 - -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 1 149 - -
Vvi11g1051 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Vvi11g1051 727 MobiDBLite consensus disorder prediction 434 458 - -
Vvi11g1051 727 Pfam PHD-finger 239 294 IPR019787 -
Vvi11g1051 727 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Vvi11g1051 727 Pfam Homeodomain 502 543 IPR001356 GO:0003677
Vvi11g1051 727 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Vvi11g1051 727 Gene3D - 496 562 - -
Vvi11g1051 727 SMART PHD_3 239 292 IPR001965 -
Vvi11g1051 727 SUPERFAMILY Homeodomain-like 486 544 IPR009057 -
Vvi11g1051 727 SMART HOX_1 491 553 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1051 Vvi-Chr11 16764446 16772528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1051 139 565 Homeobox Transcription Factor Family AT4G29940 60.592 6.95e-162 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vvi11g1051 PHD 1.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1051 - - vvi:100262260 1394.79