Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1028 ATGTCGAGCGAAGAAGCTCCAGCCGAAACGGTGTTGAAGGTTAGGGAACTAAAGGGAGAAAATGCAACCTTTGGACCTATTAGAGACCTTGGTTCGCACCACTACTGGCATGAAAGAGAAAGCCGATGGGGAGAGATCTTCACCATGCGCAGCCATGCCGGCTGCCAAGATGTTTCACAAGGATGCAAGGAACTTGATGTTATTGTTCTTCATGTCAAGCTTCGTGCTGTCAGAGGAAATAAGACCAAGACACCTGGTCCTGGTGCCCAGTCCACCCTCCAAGCCCCTTGCTCGTTCTAG 300 0.5067 MSSEEAPAETVLKVRELKGENATFGPIRDLGSHHYWHERESRWGEIFTMRSHAGCQDVSQGCKELDVIVLHVKLRAVRGNKTKTPGPGAQSTLQAPCSF* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1028 99 Gene3D Ribosomal protein S11 44 97 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vvi11g1028 99 MobiDBLite consensus disorder prediction 79 99 - -
Vvi11g1028 99 MobiDBLite consensus disorder prediction 84 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1028 Vvi-Chr11 16226750 16227049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1028 55 95 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 70.732 6.30e-15 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1028 K02955 - cmk:103188238 67.0106