Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1024 ATGGCTACCAAAAAGTGGCAGAAAAGCTACTTTGATGTGTTAGGTCTCTGCTGTTCATCAGAGGTCCCTCTGATTGAGAAGATTCTGAAGCCTCTAGATGGTGTCAAAGAGATTTCAGTCATTGTCCCATCCAGAACTCTCATTGTTGTCCATGACAATCTCCTCATTTCCCAGATTCAAATTGTTAAGGCACTAAACCAAGCAAGATTAGAGGCTAATGTTAGAATATATGGGGAAGTCGCTTATCAGAAGAAATGGCCTAGTCCTTTTGCAATTGTTTCTGGTATCTTACTCTTGCTATCATTTCTCAAATATGTGTATCAACCTTTCCGGTGGCTCGCTCTTGGAGCGGTTGCTGCCGGCATCTTTCCCATCGCCTGGAGAGGGATAGTGGCCATCCGAAACTTCACACTTGATATCAACATTCTTGTTCTCATCGCAGTGATTGGGACAATTGCTTTGAATGATTATTGGGAAGCTGGGTCCATAGTATTTCTCTTCACCATTGCAGAATGGCTTGAGTCAAGGGCTAGTCACAAGGCAACTGCAGTCATGTCATCGCTGATGAGTATAGCTCCTCAAAAGGCAGTGATAGCTGACACCGGAGAAATTGTAGAAGCCAACAGTGTCCTGGTGGACACAATCATCGCTGTTAAGACTGGAGAAGTCATACCTATTGATGGAATTGTAGTAGAAGGAAAATGTGAGGTCGATGAGAAGAGCTTAACAGGAGAGTCATTTCCAGTGGCCAAACAAAAGGACTCCACTGTTTGGGCTGGCACCATAAATCTAAATGGTTACATCAGTGTAAAAACTACAGCCCTAGCTGAGGACTGTGTGGTGGCCAAGATGGCAAAGCTAGTAGAAGAAGCTCAAAACAGCAAGTCCAAAACTCAGAGGTTCATAGACAAATGTACCAAGTTTTACACCCCAGTGGTAGTGCTAATATCGGCTGGGCTTGCGGGGATTCCTGCTGCCTTAAGGGTTCATGATCTAAGTCATTGGTTTCACCTATCACTGGTTGTACTAGTAAGTGCATGTCCATGTGCACTGATTCTCTCAACGCCAGTTGCTACATTCTGTGCACTTTCAAAGGCTGCTGTATCTGGGTTGCTCATCAAAGGAGGAGAGTATCTTGAAATTCTTGCTAAAATCAGGATCATGGCTTTTGACAAAACCGGTACAATTACAAGGGGTGAATTTGTTGTTAAGGATTTCCAGTCTCTGCGGGATGATGTTAGCTCCGATACATTGCTCTACTGGGTTTCTAGCATTGAGAGTAAGTCGAGTCATCCGATGGCAGCAGCTCTTTTTGATTATGGACTGTCACAATCCGTCGAGCCAAAGCCAGAAAATGTGGAAGAGTTTCAGAATTTTCCCGGGGAAGGAATCCATGGGAAAATTGATGGGAAAGACATCTATGTTGGAAACAGAAAAATCGCTCTAAGAGCTGGGTGTGAAACAGTTCCAACCATAGGAGAAGACAAGGAAGGAAAGACAATTGGGTATGTATACTCTGATGCAACTCCAACTGGAATTTTTACCCTCTCCGACGCTTGTCGAACAGGGGTTGTGGAGGCTATTAAAGAGCTGAAGTTATTGGGAATTAAATCTGCCATGCTTACAGGAGATAGTCATGCATCAGCTATGCATACACAAGATCAGCTAGGGCATACTCTAGAGGTTGTTCATGCAGAACTTTTACCTGAAGATAAGGCGAGAATCATAAAAGACTTTAAGGAGGAAGGACCAACAGCCATGATTGGTGATGGTGTAAATGATGCCCCTGCATTGGCCACAGCAGATATTGGTATCTCAATGGGCATTGCGGGTTCAGCACTTGCGACAGAGACAGGGCATGTGGTTCTTATGACAAATGATATTAGAAAAATACCCAAAGCTGTTCGGTTAGCAAGGAAAACCCACAGAAAAGTAGTTGAGAATGTCATTTTATCAATCACTACAAAGGCTGCCATCCTTGCCTTGGCCATTGCAGGTCACCCGCTTATTTGGGCAGCAGTTCTTGCTGATGTCGCCACTCATCTCATAATCATCAGCATAGTTGTTCCAACAGCATTTCTCAAAAGAAGTGTGAGCCTCAGAAGTGTTCTTCCCAGAGGTGTGCTTCAAGATGTCAGCCTGATCATTCCGGGTTGA 2157 0.4418 MATKKWQKSYFDVLGLCCSSEVPLIEKILKPLDGVKEISVIVPSRTLIVVHDNLLISQIQIVKALNQARLEANVRIYGEVAYQKKWPSPFAIVSGILLLLSFLKYVYQPFRWLALGAVAAGIFPIAWRGIVAIRNFTLDINILVLIAVIGTIALNDYWEAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGEIVEANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYTPVVVLISAGLAGIPAALRVHDLSHWFHLSLVVLVSACPCALILSTPVATFCALSKAAVSGLLIKGGEYLEILAKIRIMAFDKTGTITRGEFVVKDFQSLRDDVSSDTLLYWVSSIESKSSHPMAAALFDYGLSQSVEPKPENVEEFQNFPGEGIHGKIDGKDIYVGNRKIALRAGCETVPTIGEDKEGKTIGYVYSDATPTGIFTLSDACRTGVVEAIKELKLLGIKSAMLTGDSHASAMHTQDQLGHTLEVVHAELLPEDKARIIKDFKEEGPTAMIGDGVNDAPALATADIGISMGIAGSALATETGHVVLMTNDIRKIPKAVRLARKTHRKVVENVILSITTKAAILALAIAGHPLIWAAVLADVATHLIIISIVVPTAFLKRSVSLRSVLPRGVLQDVSLIIPG* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1024 718 Pfam haloacid dehalogenase-like hydrolase 385 602 - -
Vvi11g1024 718 SUPERFAMILY Calcium ATPase, transduction domain A 203 288 IPR008250 -
Vvi11g1024 718 Pfam E1-E2 ATPase 199 367 - -
Vvi11g1024 718 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Vvi11g1024 718 Gene3D - 400 520 IPR023299 GO:0000166
Vvi11g1024 718 FunFam Putative cadmium/zinc-transporting ATPase 3 400 520 - -
Vvi11g1024 718 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 666 IPR023298 -
Vvi11g1024 718 Gene3D - 382 639 IPR023214 -
Vvi11g1024 718 ProSiteProfiles Heavy-metal-associated domain profile. 7 73 IPR006121 GO:0046872
Vvi11g1024 718 FunFam Putative cadmium/zinc-transporting ATPase 3 3 76 - -
Vvi11g1024 718 Gene3D - 2 76 - -
Vvi11g1024 718 SFLD Haloacid Dehalogenase 372 641 - -
Vvi11g1024 718 ProSitePatterns Hypothetical cof family signature 2. 588 610 - -
Vvi11g1024 718 NCBIfam cadmium family heavy metal-translocating P-type ATPase 140 685 - -
Vvi11g1024 718 SUPERFAMILY HAD-like 389 684 IPR036412 -
Vvi11g1024 718 NCBIfam HAD-IC family P-type ATPase 163 666 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1024 718 SUPERFAMILY HMA, heavy metal-associated domain 4 73 IPR036163 GO:0046872
Vvi11g1024 718 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1024 718 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1024 718 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi11g1024 718 SFLD p-type atpase 372 641 IPR044492 -
Vvi11g1024 718 CDD P-type_ATPase_HM 90 685 - -
Vvi11g1024 718 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Vvi11g1024 718 PRINTS P-type cation-transporting ATPase superfamily signature 238 252 - -
Vvi11g1024 718 PRINTS P-type cation-transporting ATPase superfamily signature 534 544 - -
Vvi11g1024 718 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Vvi11g1024 718 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vvi11g1024 718 NCBIfam heavy metal translocating P-type ATPase 140 685 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi11g1024 718 FunFam Copper-transporting ATPase 1, putative 178 292 - -
Vvi11g1024 718 Gene3D - 178 292 - -
Vvi11g1024 718 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 2 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1024 Vvi-Chr11 16080582 16085813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1024 1 685 Primary Pumps ATPases AT4G30110 72.198 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1024 K01534 - vvi:100243678 1310.82