Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1019 ATGATTGGGCATTATTTGGTTGAGTTCTCAATCTCATACAAGCCAGTGAAACACGGAAGACCTGGTATTGGTGCCACCCACTCATCAAGGTTCATTCCTCTCAAGTGA 108 0.4444 MIGHYLVEFSISYKPVKHGRPGIGATHSSRFIPLK* 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1019 35 Gene3D 30s Ribosomal Protein S19; Chain A 1 35 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vvi11g1019 35 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 35 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vvi11g1019 35 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 1 35 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g1019 Vvi-Chr11 15949880 15949987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1019 1 35 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 94.286 1.05e-19 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1019 K02958 - han:110931000 75.0997