Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g1012 ATGGGAGTCTTCACATTCGTGTGCCGGAGCTCCGGCAAGGAGTGGACCGCGAAGCAGATGAACGGCGATCTTGAAGAGTCCGCGGCCTCCACTTACGATCTGCAGAGGAGGTGCGTTCAGTCTGCTCTCTCCGCCGACTCCTCCGGCGGAGTTCAGTCATCTTTCTCCTACGTCACTCCTTCCTCTGCCGTTATCCAGGTGATTGTTGGTGGCGGTGGAGGCGGCGGCTTCTTTGGTGGTGGTGGAGCTGCTGCAGCAGCACCTTCTGGGGGAGGGGCACCGGCAGCTGATGCACCTCCAGCTGAGGAGAAAAAGGAAGAGAAGGAAGAGAGTGATGACGATATGGGATTCTCACTCTTTGATTAG 366 0.5765 MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRRCVQSALSADSSGGVQSSFSYVTPSSAVIQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEESDDDMGFSLFD* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g1012 121 MobiDBLite consensus disorder prediction 80 121 - -
Vvi11g1012 121 Pfam 60s Acidic ribosomal protein 76 120 - -
Vvi11g1012 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g1012 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 76.471 1.29e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g1012 K02942 - vvi:100259048 158.688