Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0990 ATGCCGAACCACGTCCACCGCCACCATGCCGACTCCGCTGCCACTGCCGGGCCACCTCCTTCCAAACCAAACCCTAAGCTCCTCTCCTTCTTCTTCCTCCAAGCCATCATCATGACCGCTGTCATCTCCCTTTTCTTCCTCTTTGTCGGCGTAGCCGCCATACTCCTCCTCCACATCTGTTTCGCCGGCGGCGTCTTCCATCACCGACGCCGCCGCAGCACTTGCCTTCCAAATTCCGGCTACTCTGCGGAAGACCTACAGAAGCTTCCCCGATTCCGGTTCGATCGCGTGGAAGCAGAAACAGCGAGAGAATGCGTGGTGTGTTTGGAGGCGTTGAGGGAAGGGGAGTGGTGCCGAAGCCTTCCAGACTGTGATCACATCTTCCATTCCAATTGCGTCGATAAATGGCTGATAAAAGTGCTGGCTTGCCCCACTTGTCGTGCTCCGGTTCGGTTCAACAGCGGCTCAGCCGGTTTGGAGAACAGGGGGCTGAAGGAATGGTAG 504 0.5734 MPNHVHRHHADSAATAGPPPSKPNPKLLSFFFLQAIIMTAVISLFFLFVGVAAILLLHICFAGGVFHHRRRRSTCLPNSGYSAEDLQKLPRFRFDRVEAETARECVVCLEALREGEWCRSLPDCDHIFHSNCVDKWLIKVLACPTCRAPVRFNSGSAGLENRGLKEW* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0990 167 MobiDBLite consensus disorder prediction 1 20 - -
Vvi11g0990 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Vvi11g0990 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 157 - -
Vvi11g0990 167 SMART ring_2 105 146 IPR001841 -
Vvi11g0990 167 SUPERFAMILY RING/U-box 86 153 - -
Vvi11g0990 167 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vvi11g0990 167 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0990 Vvi-Chr11 15329457 15329960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0990 22 152 C3H Transcription Factor Family AT2G18670 42.963 2.51e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0990 - - vvi:104880755 348.206