Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0981 ATGGCGGAAGACAATAAAGAAGTCAAGTCATTTAAGGATTTGGGGATATGTGAGCAATTGGTGGAGGCTTGTGAAAATTTAGGATGGAAAACACCATCTAAGATACAGGCTGAAGCCATTCCTCATGCACTAGAAGGAAAGGACTTGATTGGGCTTGCACAAACAGGTTCTGGTAAGACTGGAGCATTTGCACTTCCCATACTCCAAGCCCTTTTAGATACTCCTCAAGTGCTGTTTGCTTGTGTGCTCTCCCCTACTCGGGAACTTGCTATTCAGATTGCAGAGCAGTTTGAAGCTTTAGGTTCTGGAATTGGTCTAAAGTGTGCTGTGCTTGTTGGAGGAGTGGACCATACACAACAAGCAATTGCCCTTGCAAAGCGCCCACATATTGTCGTGGGTACACCTGGACGTCTCATGGACCATCTGTCCAATACAAAAGGTTTTTCTCTTCGGACGATGAAATACTTGGTCTTAGATGAGGCTGATAGGTTGCTGAATGACGACTTTGAGAAAGCCATTGATGAGATTTTAAGTGTTATCCCACGGGAGCGAAAGACATACTTATTTTCTGCTACTATGACGAAAAAGGTGCGTAAGCTCCAGAGGGCCTGTCTCAGGAATCCTGTGAAGATTGAGGTTGCATCTAAATATTCCACTGTTGATACACTCAAGCAACAGTATCGCTTTGTTCCTGCTAAGTACAAGGAATGCTATCTTGTATATATTCTAACTGAGTTATCTGGAAGTACAACAATGGTTTTCACTCGTACTTGCGATGCAACTCGCCTATTGGCTTTGCTTCTTCGAAACCTTGGTTTAAGGGCTATCCCAATCAGTGGTCATATGAGTCAGGCTAAAAGACTTGGAGCACTGAACAAGTTTAAGGCTGGAGAATGTAATATACTTATCTGCACTGATGTGGCAAGTAGAGGACTTGATATTCCATCTGTTGATATGGTTATCAACTATGATATTCCCTCAAACTCCAAGGATTACATACATCGAGTGGGAAGAACTGCTCGTGCAGGAAGATCTGGGGTCGCAATCTCACTAGTGAACCAGTACGAGTTGGAGTGGTACATACAGATAGAGAAGCTTATTGGTAGGCACCTTTCTACATTTGTGTGGGGAGGTATGCATTCTGGTGGGTAA 1152 0.4349 MAEDNKEVKSFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGRHLSTFVWGGMHSGG* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0981 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 364 IPR027417 -
Vvi11g0981 383 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vvi11g0981 383 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 370 - -
Vvi11g0981 383 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Vvi11g0981 383 Pfam Helicase conserved C-terminal domain 238 343 IPR001650 -
Vvi11g0981 383 SMART ultradead3 28 226 IPR014001 -
Vvi11g0981 383 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 211 IPR014001 -
Vvi11g0981 383 CDD DEADc_DDX47 10 212 IPR044765 GO:0005524
Vvi11g0981 383 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 157 165 IPR000629 -
Vvi11g0981 383 Pfam DEAD/DEAH box helicase 34 200 IPR011545 GO:0003676|GO:0005524
Vvi11g0981 383 Gene3D - 217 375 IPR027417 -
Vvi11g0981 383 SMART helicmild6 262 343 IPR001650 -
Vvi11g0981 383 FunFam probable ATP-dependent RNA helicase DDX47 1 215 - -
Vvi11g0981 383 Gene3D - 1 215 IPR027417 -
Vvi11g0981 383 CDD SF2_C_DEAD 223 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0981 Vvi-Chr11 15149640 15175978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0981 8 365 Eukaryotic Initiation Factors Gene Family AT3G19760 33.425 7.54e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0981 K14777 - vvi:100246466 701.049