Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0972 ATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTGAGGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCCTTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGAGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGACCAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCAGCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAACGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTACTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 600 0.43 MASIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0972 199 CDD RPA1_DBD_C 30 194 IPR047192 -
Vvi11g0972 199 SUPERFAMILY Nucleic acid-binding proteins 20 195 IPR012340 -
Vvi11g0972 199 PANTHER REPLICATION FACTOR A 1, RFA1 11 159 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g0972 199 Pfam Replication factor-A C terminal domain 42 188 IPR013955 -
Vvi11g0972 199 FunFam Replication protein A subunit 8 195 - -
Vvi11g0972 199 Gene3D - 6 195 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0972 Vvi-Chr11 15046677 15047695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0972 1 199 Core DNA Replication Machinery Family AT5G08020 72.864 6.67e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0972 K07466 - vvi:100255412 394.815