Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0965 ATGATGATAACGGTGAGAGAAGCTTCTTCCTCTGCCCTCTGCTTCAACCTCAACCTCTCGAGGTCCTCTCATCCCGCTTCCACTGCCTCTCCAAGACTACGAAACTCCGTCTCAAGAGCCAGCTTTGCTGTCCACACAAAACCCAACAGCACGCCGAATTCATGGAACCTTGCTCTCTTTTGCAACAGCTGCAAAGGCCCAGTTTTTGACCCATTGGGCATCGATTCAGATAAATCTTTGGGTCTCAATGCTACCTGGGAGAGTGCCCTAGGTTTACTGTCACAAACATTTGGGAGTACCTCAAGTACAAAGAAGGATAAATCAGCTTCAGGTCAAGGAGTGGCAGCTGCAATTGAGGATAGTTCCATTGACTTTGGGGACTTCTTCAAAGGGCCATTACCAGGAAAATTTCTAAAGCTTTTGGGGTTATTGGCCTTATCCCGCCTTGGAGTCTATGTACCTCTTGGTGGTGTAAACAGGGAGGCCTTTGTTGGCAATTTAGATCAGAACAGTTTGTTGACCACTTTAGATTCATTTTCTGGAGGCGGCATTGGTCGACTTGGGATATGCTCCCTTGGCATTGTTCCCTTTATCAATGCACAGATTGTATTTCAGCTTCTCACTCAAATTTATCCCAAGTTGCAAGACCTTCAGAAAAGAGAAGGTGAAACAGGAAGAAAAAAAGTTCTTCAGTATACTCGCTATGCTTCAGTAGGTTTTGCTCTAGTGCAGGCAATTGGGCAAGTACTTTTTCTCCGGCCCTATGTCAATGACTTTAGTACACAGTGGGTTCTATCTTCTGTTACTTTATTGACTCTTGGATCAGTACTTACTACATATATTGGGGAAAGGATCTCTGACCTAAAACTTGGAAATGGTACATCCCTTCTAATCTTCACAAGCATCATCTCCTACTTGCCAGCTTCTTTTGGTAGGACGGTTGCACAGGCATTTCAGGATGGTAACTACATTGGACTCGTCATCATCATAATCTCCTTCTTCCTCTTAGTCCTTGGTATTGTGTATGTTCAGGAAGCAGAGAGGAAAATTCCACTTAATTATGCATCAAGATATACCAACAGAACTGGAGGCCTTCAAAAATCTGCTTACCTCCCTTTCAAGGTGAATAGTTCTGGGGTAATGCCGATCATATTTTCTACATCATCATTGGCTCTTCCTGGTACTGTGTCACGCTTTACTGGATTAGCTGCACTAAAGAAGGCTGCATTGGCTTTAAATCCTGGGGGTTCTCTTTATCTCCCAACCAACATACTTCTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAATTGGACCCTGATGATGTGAGTGAACAGTTGAAACGTCAAGGTGCATCAATCCCACTTGTGCGACCCGGTAAAAGTACAGCTGCATTTATTAAAATGGTACTGAGTCGGATATCAGTTCTTGGATCTGGGTTTTTGGCAATACTGGCTGCTGGTCCCTCCTTGGTTGAACAAACCACGCACCTGACAGCATTTCGGGGGTTTGCAGGCACGTCTGTTCTCATCCTTGTTGGTTGTGCTACAGACACAGCAAGGAAAGTCCAAGCAGAGATAATTTCCCAGAAATATAAGAACATAGAATTTTATGACATTGACAGGTTAGGCCGATAA 1641 0.4394 MMITVREASSSALCFNLNLSRSSHPASTASPRLRNSVSRASFAVHTKPNSTPNSWNLALFCNSCKGPVFDPLGIDSDKSLGLNATWESALGLLSQTFGSTSSTKKDKSASGQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRLGVYVPLGGVNREAFVGNLDQNSLLTTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLTQIYPKLQDLQKREGETGRKKVLQYTRYASVGFALVQAIGQVLFLRPYVNDFSTQWVLSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYIGLVIIIISFFLLVLGIVYVQEAERKIPLNYASRYTNRTGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTVSRFTGLAALKKAALALNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKMVLSRISVLGSGFLAILAAGPSLVEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRLGR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0965 546 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
Vvi11g0965 546 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Vvi11g0965 546 Gene3D SecY subunit domain 128 533 IPR023201 -
Vvi11g0965 546 NCBIfam preprotein translocase subunit SecY 136 533 IPR002208 GO:0015031|GO:0016020
Vvi11g0965 546 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Vvi11g0965 546 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
Vvi11g0965 546 Pfam SecY 189 520 IPR002208 GO:0015031|GO:0016020
Vvi11g0965 546 FunFam Preprotein translocase subunit SECY, chloroplastic 128 533 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Vvi11g0965 546 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Vvi11g0965 546 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 129 536 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0965 42 543 Chloroplast and Mitochondria Gene Families AT2G18710 81.657 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0965 K10956 - vvi:100248517 989.949