Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0925 ATGGGGATTTGTTTTAGTTCTCAAGAACACCGTTCGTCTATTAATTATAATCCAGTTGAAGTAGGCCATGTTCCTGCTACATCACCCACCAAAGAAAACAAAGAGGCAGCTACTTCTCCAAGAAAACCAGCGTCAGATGGCAGGGAAACTGCAACCAGCATTCATGTGGTTCCCAAAAATGTAAAGGATCTGCGCCAGAATCCTGGATATTGGAATGTTGATGTCTTCACATATGAAGAGATGAGATTGGCCACAAAGCTTTTCCGACCAGATCAGATACTTGGGGAGGGTGGATTTGGAATTGTCTATAAAGGAGTGATAGATGAGAATGTAAAGCCAGGTTACAAGACAACACAAGTGGCCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGGCGGAAGTCAACTACTTAGGGCAGCTCAGTCACCCAAATCTCGTGAAGCTCATTGGATTCTGCTGTGAAGATGACCATAGGCTGTTGGTCTATGAATATATGGCATGCGGAAGCCTGGAAAAACACCTATTTCGCAGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATACCGAGATTTCAAGACATCAAATATCTTGCTAGATGCGAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATGCAGCTCCTGAGTATGTAATGACTGGGCATTTAACGGCTCGAAGTGATGTTTATGGTTTTGGAGTGGTGCTGCTTGAGCTGCTCATTGGAAGGAGGGCCATGGACAAGAGCAGGCCCAGTCGAGAGCACAACCTAGTTGAATGGGCACGCCCACTCTTGAACCATAATAAGAAGCTACTGAGGATCTTAGATCCAAGAATGGAGGGGCAATACTCAACCAAAATGGCACTGAAGGTTGCCAATTTGGCATATCAATGCCTCAGTCAAAACCCAAAAGGAAGGCCTGTTATGAGCCAGGTAGTTGAAATACTTGAAACTATTGCCACACAATCAGAAAATCAGGAAGAGGCCATGCTTCAAAGTGGAGGCAGCAGCTGTGTAACCCTTTATGAAGTTCCAAAGGACACCCATAGCAACCCAGATAAGAAGCAAAAGCCAACTAATATGGATGGTGAAAAAGGTGAGACTCATCAAAAGAGAAAACCATCAAATGGAAGGAGCAAGAGTGAGCCTCCCAATGAAGGTGGTCTCTGCAGTCCATTTGTAGATTCTGAATCCGATGAGAAACCAGTTTCCCCCAGAAGTTGA 1371 0.4449 MGICFSSQEHRSSINYNPVEVGHVPATSPTKENKEAATSPRKPASDGRETATSIHVVPKNVKDLRQNPGYWNVDVFTYEEMRLATKLFRPDQILGEGGFGIVYKGVIDENVKPGYKTTQVAIKELNPEGFQGDREWLAEVNYLGQLSHPNLVKLIGFCCEDDHRLLVYEYMACGSLEKHLFRRVCATLTWSTRMKIALDAAKGLAFLHGAERSIIYRDFKTSNILLDANFRAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRAMDKSRPSREHNLVEWARPLLNHNKKLLRILDPRMEGQYSTKMALKVANLAYQCLSQNPKGRPVMSQVVEILETIATQSENQEEAMLQSGGSSCVTLYEVPKDTHSNPDKKQKPTNMDGEKGETHQKRKPSNGRSKSEPPNEGGLCSPFVDSESDEKPVSPRS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0925 456 FunFam Serine/threonine-protein kinase BIK1 56 170 - -
Vvi11g0925 456 CDD STKc_IRAK 94 368 - -
Vvi11g0925 456 Gene3D Phosphorylase Kinase; domain 1 63 170 - -
Vvi11g0925 456 MobiDBLite consensus disorder prediction 392 456 - -
Vvi11g0925 456 ProSitePatterns Protein kinases ATP-binding region signature. 94 123 IPR017441 GO:0005524
Vvi11g0925 456 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0925 456 Pfam Protein tyrosine and serine/threonine kinase 92 365 IPR001245 GO:0004672|GO:0006468
Vvi11g0925 456 FunFam Probable serine/threonine-protein kinase PBL8 171 383 - -
Vvi11g0925 456 MobiDBLite consensus disorder prediction 396 428 - -
Vvi11g0925 456 PANTHER OS01G0588500 PROTEIN-RELATED 45 369 - -
Vvi11g0925 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vvi11g0925 456 SUPERFAMILY Protein kinase-like (PK-like) 70 372 IPR011009 -
Vvi11g0925 456 MobiDBLite consensus disorder prediction 16 53 - -
Vvi11g0925 456 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0925 Vvi-Chr11 14297941 14304850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0925 76 370 Glycoside Hydrolase AT3G07070 50.336 8.13e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi11g0925 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0925 - - vvi:100255419 930.628