Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0920 ATGTCCCATAATTATTCACCTTGGCCTCTAATCTTCCTCGTCATCATCTCAGTGGTGCACATTAATGTTGCCTCTGGTGCCAAACCATCCCAGTCTGAAATTCTTCTCGAGTTTAAGAATTCTCTACGTAATGTTACTGCATTAGGCAGTTGGAACACATCCACTACGCCATGCGGTGGTTCGCCGGGAGGTTGGGTCGGTGTTATTTGCATAAATGGAGACGTCTGGGGATTACAACTGGAGGGTATGGGACTCATGGGCACCATTGACATGGACACCCTTGCGAAGTTGCCTCATCTGAGGGGTATAAGCTTCATGAACAATCATTTTGATGGGGCCATTCCAAAAATAAAGAAACTCAGTGCACTAAAGTCAGTTTTCTTATCCAACAACCAGTTTTCTGGGGAGATAGAGGATGATGCCTTTTCGGGTATGGTTTCGTTGAAGAAGGTGCATTTGGCACATAATAAGTTTTCAGGTGGGGTTCCTGAGTCCTTGGCTTTATTGCCTAGGATTTTGGAGTTGAGGTTGGAGGGGAACCATTTTAAAGGCCAGATACCTGAATTTAGAGCAACTCAATTGCAATCCTTCAACATATCCAACAATAACTTGGAAGGTCCGATCCCGGAAAGCCTTAGAAAGATGGAGTTGACCTCATTTTCAGGTAACAAAAATCTATGTGGAGCACCGTTGGGTTCATGTCCTCGGCCAAAGAAACCAACAACGCTAATGATGGTTGTTGTTGGAATCGTTGTGGCCTTGGCATTATCTGCCATCATTGTAGCCTTCATCCTCCTCCGCTGCAGCAAATGCCAAACAACTCTAGTACAAGTAGAGACTCCACCATCGAAAGTGACTTGTAGGGAGTTAGATAAGGTCAAGCTTCAAGAGTCTAACACTGAATCCGGGAAAAAGGTTGAGCAAGGAAAGTTGTACTACTTAAGGAATGATGAGAACAAGTGTGATTTGAAAGACTTGCTAAAAGCCTCAGCTGAAATATTAGGCAGTGGATACTTTGGCTCTTCTTACAAAGCTGTTCTGGTGAATGGGTCATCCGTGGTTGTTAAGAGGTTTAGACATATGAATAATGTTGGAAAAGAAGAGTTTCAAGAGCATATGAGAAGACTAGGGAGACTGAATCACCCCAATTTGCTTCCTTTTGTGGCTTACTACTACAGGGAGGAGGAGAAGCTCCTGGTTACTGACTTCATTGACAATGGCAGCTTGGCAATTCATCTTCATGGTAACCATGCTCGAGACCAACCAAGGCTCGATTGGGCAACTCGGTTGAAAATCATTAAAGGAATAGCCAAGGGCCTTGCATACCTCTATACTGAGCTCCCTACCCTAATTGCACCTCATAGCCACCTGAAATCTTCTAATGTTCTTCTTAGCAAGTCTTTCACGCCCCTGCTCACTGACTACGGTCTAGTACCCTTGATTAACCAGGAGATTGCCCAAGCGCTCATGGTCGCATATAAGTCACCAGAATACAAACAACATGGTCGGATAACAAAGAAGACCGACGTATGGAGTTTTGGGACATTGATACTAGAGATATTAACTGGAAAGTTTCCCACTCAAAATTTACAACAAGGTCAAGCAAGTGACACTGATTTGGCAAGTTGGGTGAATTCTGTTTCCCAGGAAGAGTGGGAAGATGAGGTGTTTGATAAAGAGATGGGAGGGACGACGAACAGTAAATGGGAGATGGTGAAGCTGTTGAAGATAGGGTTGGCTTGTTGTGAAGGGGATGTGGGAAAAAGGTGGGATATGAAGGAGGCAGTTGAGAAGATCGAAGAGTTAAAAGAGAAGGATAGCGAGGATGATTTCTATTCTTCATATGCCAGTGAAATGGAAAGCCCTTCAAGACAACTGTCAGATGAACCCTCTTTCTCATGA 1902 0.4406 MSHNYSPWPLIFLVIISVVHINVASGAKPSQSEILLEFKNSLRNVTALGSWNTSTTPCGGSPGGWVGVICINGDVWGLQLEGMGLMGTIDMDTLAKLPHLRGISFMNNHFDGAIPKIKKLSALKSVFLSNNQFSGEIEDDAFSGMVSLKKVHLAHNKFSGGVPESLALLPRILELRLEGNHFKGQIPEFRATQLQSFNISNNNLEGPIPESLRKMELTSFSGNKNLCGAPLGSCPRPKKPTTLMMVVVGIVVALALSAIIVAFILLRCSKCQTTLVQVETPPSKVTCRELDKVKLQESNTESGKKVEQGKLYYLRNDENKCDLKDLLKASAEILGSGYFGSSYKAVLVNGSSVVVKRFRHMNNVGKEEFQEHMRRLGRLNHPNLLPFVAYYYREEEKLLVTDFIDNGSLAIHLHGNHARDQPRLDWATRLKIIKGIAKGLAYLYTELPTLIAPHSHLKSSNVLLSKSFTPLLTDYGLVPLINQEIAQALMVAYKSPEYKQHGRITKKTDVWSFGTLILEILTGKFPTQNLQQGQASDTDLASWVNSVSQEEWEDEVFDKEMGGTTNSKWEMVKLLKIGLACCEGDVGKRWDMKEAVEKIEELKEKDSEDDFYSSYASEMESPSRQLSDEPSFS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0920 633 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 607 IPR046959 -
Vvi11g0920 633 FunFam Pollen receptor-like kinase 1 404 613 - -
Vvi11g0920 633 MobiDBLite consensus disorder prediction 607 633 - -
Vvi11g0920 633 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Vvi11g0920 633 FunFam pollen receptor-like kinase 1 297 403 - -
Vvi11g0920 633 SUPERFAMILY L domain-like 29 231 - -
Vvi11g0920 633 Pfam Protein tyrosine and serine/threonine kinase 332 535 IPR001245 GO:0004672|GO:0006468
Vvi11g0920 633 MobiDBLite consensus disorder prediction 614 633 - -
Vvi11g0920 633 Gene3D Ribonuclease Inhibitor 143 235 IPR032675 -
Vvi11g0920 633 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
Vvi11g0920 633 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Vvi11g0920 633 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Vvi11g0920 633 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0920 633 SUPERFAMILY Protein kinase-like (PK-like) 332 602 IPR011009 -
Vvi11g0920 633 Gene3D Transferase(Phosphotransferase) domain 1 404 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0920 Vvi-Chr11 14214325 14218578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0920 30 625 Receptor kinase-like Gene Family AT5G35390 54.849 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi11g0920 PK_Tyr_Ser-Thr 2.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0920 - - vvi:100265699 1245.72