Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0918 ATGTCAAGAACGGGGTATGGAGAAAAGAAGGTAGAGGTGGCAGTGGCAATAGATAAGGACAAAGGGAGTCAATATGCTCTTAAATGGGCTGTTGATCATCTTCTCAGCAAGGGCCAATCTGTAACACTCCTTCATATTAAACAAAAAGCATCTTCCATTCCCAACCCATTGGGGAATCAGGTCGCCATTTCCGATGTCAATGAAGATGTTGCAAGAGCTTACAAGCAGCAACTTGATAATCAGGCCAGGGAGTTGTTTCTTCCATTCCGATGCTTTTGTATGCGCAAGGATATTCAATGTAACGAAGTCATACTGGAAGGCACAGATATAACAAAAGCAATAATCGACTTTGTTACTGCCTCCTCAATTGAGATTTTAGTTGTTGGTGCCCCATCAAGGAGTGGATTTATCAGAAGATTCAAGACCACAGATGTACCAAGCAGTGTCTTGAAAGCAGCACCAGACTTTTGCACTGTGTATGTCATCTCTAAAGGAAAGATCACATCAGTGCGATCTGCCACACGTCCTGTACCGAATCCCTCTCCTCCCCCAACTGCATCTTCTCTCCATCAAAACCAAGCTAGCCCTACTCCTGATCCAACTGAAGCACATCTTAAACATAATCGCAGCACAAGAGCCTCTGAGAGGTCATCATTTGGACTCCGCAACTTGAACGACCTTGAAATCAAGTCACCCTTCACTAGAGGTAGAGCCTCACTAAGTAAATCTTATGGGGAGCTCTCAGTGCCAGAAACTGATATATCATTTGTAAGCTCAGGAAGGCCAAGCATCGATCACATTTTCCCGTTTTCAAGCTTTGCATCATCAGGAGGCAGGTCATCTGAGCTGAACTATTCACTTGACCTTTCATCATCCTCCAATGAAAGTGGGAGATTGTCATGGGCATCACAAAGCATGGAAGATGTGGAAGCTGAGATGAGGAGGCTCAAGCTTGAGCTCAAGCAAACAATGGACATGTACAGTACAGCTTGCAAGGAAGCACTGTCAGCAAAACAGACGGCAAGGGAACTCCATCGCTGGAAAATGGAAGAAGCACAGAGATTAGGAGAGGCAAGGCTAGCTGAGGAAGCTGCATTAGCAACTGCAGAGAGAGAGAAAGCAAAGGCTAAGGCAGCCCTTGAGGCAGCTGAAGCATCTCAGAGGATTGCTAAACTGGAAGCACAAAAGCGAATTAATGCAGAAATGGTAGCAATAAAAGAAGCAGAGGAAAGAAAGAAGATGCTAAATACTCTGGCACAAACTGATCTCAGGTACAGGAAATACACCATTGAGGAGATTGAAGCAGCAACTGAGTTATTTTCAGAGTCTCGGAAGATTGGGGAAGGAGGTTATGGCCCTGTATACAAGAGTTATTTGGATCATACACCAGTTGCAATAAAGGTTCTTCGTCCAGATGCAGCTCAAGGAAGGTCACAGTTTCAGCAGGAGGTTGAAGTACTAAGCTGCATACGGCATCCCAATATGGTTCTCCTCCTTGGGGCCTGTCCAGAGTATGGTTGCCTAGTCTATGAGTATATGGCTAATGGGAGCTTAGATGACCATCTCTTCCGGCGAGGGAACACCCCAGTTCTTCCATGGCAACTAAGATTCCAGATTGCGGCAGAGATAGGCACAGGTCTTCTTTTCCTCCACCAGACCAAGCCAGAACCATTAGTGCATCGTGACCTAAAACCTGGCAACATTTTGCTTGACCGTAACTTTGTCAGCAAGATCAGTGATGTTGGCTTGGCCAGGCTTGTCCCTCCATCTGTGGCCGACAGTGTAACACAGTATCTCATGACATCAACAGCCGGGACTTTCTGTTACATTGACCCAGAGTATCAGCAAACCGGAATGCTTGGAATAAAATCGGATATTTACTCACTCGGGATTATGCTTCTGCAAATAATTACTGCCAAACCCCCAATGGGTTTGACTCATTATGTGGAACGGGCTATTGAGAAGGGGACTTTTGCGGAGGTGCTTGACCCAGCTGTTCATGATTGGCCAGTTGAAGAGGCCTTGAAGTTTGCCAAATTAGCTCTTCAGTGCGCAGAGCTGAGACGGAAAGACAGACCAGATCTTGGGAATGTTGTCTTACCTGAGCTTAACAGATTGAGAACACTAGCAGAAGAAAACATGTCCAGCATAATGTTAGACAGCACTACAGTAGCCTCCCCAAGAAAAAGCAATGTTTCCATAGCACATACCTTACGTATAGAGTAG 2226 0.4555 MSRTGYGEKKVEVAVAIDKDKGSQYALKWAVDHLLSKGQSVTLLHIKQKASSIPNPLGNQVAISDVNEDVARAYKQQLDNQARELFLPFRCFCMRKDIQCNEVILEGTDITKAIIDFVTASSIEILVVGAPSRSGFIRRFKTTDVPSSVLKAAPDFCTVYVISKGKITSVRSATRPVPNPSPPPTASSLHQNQASPTPDPTEAHLKHNRSTRASERSSFGLRNLNDLEIKSPFTRGRASLSKSYGELSVPETDISFVSSGRPSIDHIFPFSSFASSGGRSSELNYSLDLSSSSNESGRLSWASQSMEDVEAEMRRLKLELKQTMDMYSTACKEALSAKQTARELHRWKMEEAQRLGEARLAEEAALATAEREKAKAKAALEAAEASQRIAKLEAQKRINAEMVAIKEAEERKKMLNTLAQTDLRYRKYTIEEIEAATELFSESRKIGEGGYGPVYKSYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDHLFRRGNTPVLPWQLRFQIAAEIGTGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADSVTQYLMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKPPMGLTHYVERAIEKGTFAEVLDPAVHDWPVEEALKFAKLALQCAELRRKDRPDLGNVVLPELNRLRTLAEENMSSIMLDSTTVASPRKSNVSIAHTLRIE* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0918 741 Gene3D HUPs 12 164 IPR014729 -
Vvi11g0918 741 Gene3D Phosphorylase Kinase; domain 1 417 512 - -
Vvi11g0918 741 FunFam U-box domain-containing protein 51 513 713 - -
Vvi11g0918 741 Coils Coil 357 411 - -
Vvi11g0918 741 Pfam Protein kinase domain 441 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0918 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 162 - -
Vvi11g0918 741 MobiDBLite consensus disorder prediction 171 218 - -
Vvi11g0918 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Vvi11g0918 741 Pfam Universal stress protein family 13 154 IPR006016 -
Vvi11g0918 741 SMART serkin_6 440 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0918 741 PANTHER OS02G0152300 PROTEIN 12 722 - -
Vvi11g0918 741 SUPERFAMILY Protein kinase-like (PK-like) 423 699 IPR011009 -
Vvi11g0918 741 CDD STK_N 13 165 - -
Vvi11g0918 741 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 412 512 - -
Vvi11g0918 741 Coils Coil 299 326 - -
Vvi11g0918 741 ProSiteProfiles Protein kinase domain profile. 440 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0918 741 Gene3D Transferase(Phosphotransferase) domain 1 513 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0918 Vvi-Chr11 14179779 14186973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0918 4 734 Receptor kinase-like Gene Family AT1G78940 56.901 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi11g0918 Pkinase 9.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0918 - - vvi:100262028 1301.96