Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0911 ATGAAGGCGCCTACGAACGGTGCTGCGGCTGCGGCGACGGCAGCCCCGAATCCATGCGAAGGAGAGAAAAAGAGCATCAACCCAGAGCTATGGCAGGCGTGCGCCGGACCTCTAGTGAACTTGCCGCCGGCGGGGACGCTCGTCGTCTATTTTCCACAAGGCCACAGTGAACAGGTTGCAGCATCTATGAAGAAAGATGTGGACGCTCAAATCCCAAACTATCCGAATCTTCCCTCGAGGCTGCTATGCATCCTCCATAATGTCACTTTGCATGCGGATCCGGAAACCGATGAAGTATATGCTCAGATGACACTCCAACCAGTTCCTGCTTATGACAAGGAATCATTGTTGAGATCAGACCTTGCACTCAAGACAAATAAACCACAAACAGATTTTTTCTGTAAAACTTTGACAGCAAGTGACACAAGCACACATGGAGGTTTCTCGGTACCACGCCGTGCAGCAGAGAAGATTTTCCCTCCTCTTGATTTCTCTATGCAACCACCTGCGCAAGAACTTGTGGCAAAGGACTTGCATGATAATGTATGGACCTTTCGTCATATCTACCGTGGGCAACCAAAACGCCACTTGCTGACGACAGGGTGGAGCCTTTTTGTTAGTGGAAAGAGGCTTTTTGCAGGTGACGCAGTCTTGTTTATTAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGGCGGGCTAACAGGCAACCCACCAATTTATCATCATCAGTTTTGTCAAGTGATAGTATGCACATTGGGATCCTAGCGGCAGCAGCCCATGCAGCTGCAAACAATAGCCCTTTTACTGTGTTTTACAATCCAAGGGCTAGCCCATCTGAATTTGTTATCCCTTTAGCCAAGTACTACAAGGCAGCCTACAGCAACCAAATATCTCTTGGCATGCGCTTCCGGATGATGTTTGAAACCGAAGAGTCGGGAACAAGAAGGTACATGGGTACAATTACAGGTATCAGTGATCTAGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAACGGAGGAACCGTGTCTCAATCTGGGAGATTGAACCAGTGACAGCCCCATTTTTTATCTGTCCTCCTCCATTCTTCCGATCAAAACGTCCGAGGCAACCAGGAATGCCAGATGATGAATCTTCTGATCTAGAGAATCTTTTCAAAAGGACAATGCCTTGGCTTGGTGATGATATCTGCATGAAAGATCCCCAGGCTGTCCATGGCCTGAGCTTAGTTCAATGGATGAACATGCAGCAAAACCCTCCCTTGGGTAACTCTGCACAACCAAACTACATGCATTCCTTATCAGGGTCTGTCATGCAAAACCTTGCAGGAGCAGATCTCTCCCGTCAGTTAGGCTTGTCAGCACCCCAAATCCCTCAGCAAAGCAACTTACAGTTCAATAATGCACAGAGGCCTCCTCAGCAAGTGCCACAGCTTGATCAGCTCACAAAGCTGCCTGCAACATTGAATCCATTGGGCTCTGTTATACAGCCACAGCAACAGTTGAATGATATTGCTCAGCAACCGAGGCAAAATTTGATGAATCAAACTCTACCCTCAAGCCAGGTTCAGGCTCAACTTCTGCAGCAGCCTCAAGCTCTGGTCCAAAACCACAATATTCTTCAGCAGCAACCATCTGTTCAAAATCAGCAGCTCCACAGAAACCTCCCTCAGAACCTGCAACAGCAGCAGCAACCACAGCAGCAACAACAACAAATCATGGGTCAAAATCAACAACAAAATCTGATGCCATCCCAGCCACCTGATCAAGCAAACCAACAATTGCAAATGTCTGACAATCAAATTCAGCTTCAACTGTTACAGAAGCTTCAGCAGCAACAGCAGTCCCTTCTAGCACAGCAGTCAACAATGCAACAAACTGCTCAACTTACTCAACTCCAAGATCCACAGAGGCAGCTCTTAGATGTGTCTCAGAACTTCTCCAGGTCTGTTGCATCTGGCCAAATACTGGAAATGCCTCAAGCAACATCCACCTCGCTCCCGCAATCGCTTGTTATTCCGCAGCAGATAACAAAGAGTAACAGCCAGACAAATGTTCGATTTTCTCATCCACCTCAGCAGCCAAAGCTTCAACAGCAGCAGCCTGGCATGCTGCCTGAATTGCCTGGGCATGTGGTACTTCCCCCAATGACAGCAACTAATCAGCTTTCCACTGCTGGAAGCAGTTTGCTGACTGGTGCTGCAGGAGCAGGGCAATCTGGGATTACCGATGATGTTCCATCTTGCTCCACCTCACCATCCACTAACAACTGCCCAAATGTAATTCAACCAATCTTGAATGGAAGAGCCCACCGAACCACAGCAATGGAGGAGATGGCTCAGTCCTCTGCCACTCTCTTGAGTGGCAGTGGCTTGGAGACTATATCAGCTAACGCTAACTTGGTTAAAGATTTTCAGCAGAAACCTGATATTAAGCCTTCTTTGAATATCTCCAAGAGTCATAACCAGGGATTTTTTGCCCCACAAACATATGTAAATGTTGCAGCAGTCCAGACTGATTACTTGGACACATCATCTTCAGCAACTTCGGTTTGCTTGTCACAGAATGACCACTTACAGCAGAATAACAACCCATTGTCTTTTAATCAGCCATCAATGATGTTCAGAGACACGAGTCAAGATAGAGAAGCTCAGGCAGACCCCAGGAACAATGTTCAGTTTGGTACTAACATTGATAGCCAATTGGGGATACCTATGTTGCCAGACCCCATACTTTCAAAGGGCATGGTGGGATCAGGGAAGGAGTTCTCAAATAATCTCTCTTCAGGAGGTCTGCTTGCCAACTATGAAAATCCCAAAGATGCTCAGCAGGATCTTTCATCCTCAATTGTTTCACAGTCATTTGGAGTTCCAGATATGGCATTCAATTCTATTGATTCCGCAATAAACGATAGCAGCTTCTTGAACAGGGGTCCATGGGCCCCAGCACCTCAATTTCAGCGGATGCGGACATATACGAAGGTGTATAAGCGAGGAGCAGTAGGGAGATCCATTGATATCACCCGTTATTCAGGCTATGATGAGCTTAAACAAGATTTGGCTCGTAGGTTTGGTATAGAGGGACAGCTGGAGGACCGACAGAGGATAGGCTGGAAACTCGTGTACGTGGATCATGAGAATGACGTTCTGCTAGTGGGGGATGATCCTTGGGAGGAGTTTGTGAACTGTGTACGCTGCATCAAGATCCTTTCTCCTCAAGAAGTCCAGCAGATGAGCTTGGATGGAGATATTGGTAACAGTGTACTTCAGAATCAAGCCTGTAGTAGTTCTGATGGTGGCAATGCTTAA 3348 0.4716 MKAPTNGAAAAATAAPNPCEGEKKSINPELWQACAGPLVNLPPAGTLVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSRLLCILHNVTLHADPETDEVYAQMTLQPVPAYDKESLLRSDLALKTNKPQTDFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAAYSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESSDLENLFKRTMPWLGDDICMKDPQAVHGLSLVQWMNMQQNPPLGNSAQPNYMHSLSGSVMQNLAGADLSRQLGLSAPQIPQQSNLQFNNAQRPPQQVPQLDQLTKLPATLNPLGSVIQPQQQLNDIAQQPRQNLMNQTLPSSQVQAQLLQQPQALVQNHNILQQQPSVQNQQLHRNLPQNLQQQQQPQQQQQQIMGQNQQQNLMPSQPPDQANQQLQMSDNQIQLQLLQKLQQQQQSLLAQQSTMQQTAQLTQLQDPQRQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKLQQQQPGMLPELPGHVVLPPMTATNQLSTAGSSLLTGAAGAGQSGITDDVPSCSTSPSTNNCPNVIQPILNGRAHRTTAMEEMAQSSATLLSGSGLETISANANLVKDFQQKPDIKPSLNISKSHNQGFFAPQTYVNVAAVQTDYLDTSSSATSVCLSQNDHLQQNNNPLSFNQPSMMFRDTSQDREAQADPRNNVQFGTNIDSQLGIPMLPDPILSKGMVGSGKEFSNNLSSGGLLANYENPKDAQQDLSSSIVSQSFGVPDMAFNSIDSAINDSSFLNRGPWAPAPQFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDIGNSVLQNQACSSSDGGNA* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0911 1115 Coils Coil 620 640 - -
Vvi11g0911 1115 Gene3D - 297 368 - -
Vvi11g0911 1115 MobiDBLite consensus disorder prediction 1 22 - -
Vvi11g0911 1115 SMART B3_2 133 235 IPR003340 GO:0003677
Vvi11g0911 1115 FunFam Auxin response factor 998 1092 - -
Vvi11g0911 1115 MobiDBLite consensus disorder prediction 571 607 - -
Vvi11g0911 1115 ProSiteProfiles PB1 domain profile. 1003 1087 IPR000270 GO:0005515
Vvi11g0911 1115 FunFam Auxin response factor 131 235 - -
Vvi11g0911 1115 Gene3D - 131 234 IPR015300 -
Vvi11g0911 1115 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 638 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g0911 1115 MobiDBLite consensus disorder prediction 692 714 - -
Vvi11g0911 1115 Pfam AUX/IAA family 1002 1088 IPR033389 -
Vvi11g0911 1115 SUPERFAMILY DNA-binding pseudobarrel domain 121 262 IPR015300 -
Vvi11g0911 1115 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Vvi11g0911 1115 FunFam Auxin response factor 297 368 - -
Vvi11g0911 1115 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Vvi11g0911 1115 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi11g0911 1115 Gene3D - 998 1092 - -
Vvi11g0911 1115 CDD B3_DNA 132 224 IPR003340 GO:0003677
Vvi11g0911 1115 SUPERFAMILY CAD & PB1 domains 1016 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0911 Vvi-Chr11 13985443 13992136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0911 1 480 B3 DNA Binding Superfamily AT1G19220 74.120 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi11g0911 AUX_IAA 4.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0911 - - vvi:100263801 2051.94