Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0903 ATGAGGTTTCTTTCTGTGATGGAGTGGAATTTAAGAACTCCCTCAGAATGGGACTGGGAGACCCTAACAGCGTTTAATACTAAGGCTTTCGAATTTCCTGGGCGGGTACAACTGTCAAACCATGATATTGAAGTAGATGGAGGGGTGGATAATGGATCTGTATACTCATCTGGAGGTGGTGGCTTCTCTGGTTCTGATTTGGGTCATGGCTCTTCTTCCAGGAGCTCCATCTCTGTTTCAGGTGATTCTTCGTTGAAAGAGGGAATAAAGAAATTTAGGAATGTTGAAGATTTTCATAAAGATTTTAGTGAGAACAAAGAGTTGATAAGAGTGGGCAGTAGTGGAAATTGTCCAACTGTAGGGACTTCTGATGGCTCTGGTGAAGCAATGATTGGTTTAAAACTGGGGAAGCGGACTTACTTTGAAGATGTTTGTGCTGCTAGCACCGCTAAAACTACAACTTCTTCTGTCAATCCTGCATCATCTGTTTCTGCAACAAAGCGATTTAGAACATCTTATCAGAGTTCGCAAACCCCTCGTTGCCAAGTTGAAGGATGCAACCTTGACCTCAAGTCAGCTAAGGATTACCATCGCAGGCATAGAATCTGTGAAAACCATTCCAAAAGCCCCAAGGTCATTGTAGCTGGTTTGGAGCGCCGGTTTTGTCAACAGTGCAGCAGGTTCCATGAGTTGACAGAGTTTGATGACAAGAAGCGAAGTTGTCGTAGGCGCCTCAATGACCACAATGCACGGCGCCGCAGGCCACATCCAGAGTCAATCCAATTTAGCTCTGGAAGGCTGCCTTCATCACTATATGATGGCAGACAGCAGATTAATCTTGCATGCAACAGGTTACCAATCCCTGTTGCAACTCCTATGTGGCAAAATCCATGCAGCTTTAAGGACACCCAGACTGGAGGTTCTTTGATTAGGCCTGTAAAAGCAGTAGGCATTGATAAGCAGCTGCATTTGCCCACTGATGAGATGCCGGATGCTATTTCTATGCTACATGGTAACTCAGAGAGGATGTTGTCTTTTGATGGCAGTACACCTCGGGTCCTTAACCAAGGTTTAGAGGCATCTGCAATTGCTTCTAATTCAAATGTAGCACCAGATTTCCGGCGTGCTCTCTCTCTTCTGTCAACTAATTCTTGGGGTTTGAATGATCCTGGACCTACTTCTTTGGACCAGCTCATGCATGTAAACCAAACCAGCATGGCCCAGCCCACGATGCATGCTGAACCACACAATTGGGCTCTTGCTTCATCAGAAAATATGCACGTTCAACAAACACCTTCAGAGACTCGGGGACATTCATTGGATTTGCATAATAATGGAAGCAGCATGTTTCAAGAGTTTCAATTATTTAAAGCACCTTATGAGTCTGGCTGTTTTTATCCCAATCAAATTAACTGA 1416 0.4449 MRFLSVMEWNLRTPSEWDWETLTAFNTKAFEFPGRVQLSNHDIEVDGGVDNGSVYSSGGGGFSGSDLGHGSSSRSSISVSGDSSLKEGIKKFRNVEDFHKDFSENKELIRVGSSGNCPTVGTSDGSGEAMIGLKLGKRTYFEDVCAASTAKTTTSSVNPASSVSATKRFRTSYQSSQTPRCQVEGCNLDLKSAKDYHRRHRICENHSKSPKVIVAGLERRFCQQCSRFHELTEFDDKKRSCRRRLNDHNARRRRPHPESIQFSSGRLPSSLYDGRQQINLACNRLPIPVATPMWQNPCSFKDTQTGGSLIRPVKAVGIDKQLHLPTDEMPDAISMLHGNSERMLSFDGSTPRVLNQGLEASAIASNSNVAPDFRRALSLLSTNSWGLNDPGPTSLDQLMHVNQTSMAQPTMHAEPHNWALASSENMHVQQTPSETRGHSLDLHNNGSSMFQEFQLFKAPYESGCFYPNQIN* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0903 471 Pfam SBP domain 181 254 IPR004333 GO:0003677
Vvi11g0903 471 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Vvi11g0903 471 MobiDBLite consensus disorder prediction 246 268 - -
Vvi11g0903 471 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Vvi11g0903 471 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Vvi11g0903 471 Gene3D - 171 242 IPR036893 GO:0003677|GO:0005634
Vvi11g0903 471 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 434 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0903 Vvi-Chr11 13590666 13607243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0903 7 452 SBP-box Gene Family AT5G43270 37.885 5.25e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi11g0903 SBP 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0903 - - vvi:100246757 807.364