Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0899 ATGTTGGAGGGTCCAAAATTCACTGGAATTATAGGAATGAACAACAATGAATATGATCTTTCTCAAGGGTTCTACCATAAGCTCGGTGAGGGTTCGAATATGTCAATAGAAAGTTATGGGAGCTTGCAGACAAGCAATGGTGGAGGCTCTGTTGCGATGTCTGTAGATAACAGCAGTGTTGGATCAAATGATTCCCACACTCGCATCTTGAATCACCAAGGATTGCGCCGTGTTAACAACAATTACTCTGTTGCTGCGAGTAATAACCGTGGAAGAGTCTCACATGGCTTAAGTGATGATGCTCTGGCCCAGGCTCTGATGGATAGTAGATACCCTACACTGGGACTTGAGAATTTTGAGGAATGGACAATCGATTTGGGAAAGCTTAATATGGGAGAGGCATTTGCACAGGGAGCTTTTGGTAAACTGTACAAAGGTACCTATAATGGTGAGGATGTTGCTATAAAGATTTTGGAGAGGCCTGAAAATGACTTGGAGAAGGCACAGTTGATGGAACAGCAATTTCAGCAGGAAGTTATGATGCTGGCCACATTAAAGCATACAAACATAGTTCGATTTATTGGTGGATGCCGGAAGCCGATGGTATGGTGCATTGTGACAGAGTATGCAAAGGGCGGTTCAGTGCGACAGTTTTTGACAAAGCGGCAGAACCGACAAGTACCTCTGAAATTGGCAATCAAACAAGCCCTGGATGTTGCGAGGGGGATGGCGTATGTGCATGGCCTTGGGCTGATCCACAGGGATCTAAAATCTGACAACTTGCTAATTTTTGCAGACAAGTCCATCAAAATTGCAGACTTTGGGGTTGCTCGAATAGAGGTGCAAACAGAAGGAATGACACCAGAGACAGGGACATACCGCTGGATGGCCCCGGAGATGATCCAGCACAGGCCTTACACACAGAAAGTCGACGTGTATAGCTTTGGGATCGTTCTTTGGGAACTCATCACTGGGATGCTTCCATTCCAGAACATGACTGCAGTTCAGGCAGCTTTTGCGGTTGTCAACAAGGGTGTTCGTCCAATCATCCCCAATGACTGCTTACCTGTTCTCAGTGAGATCATGACCCGATGCTGGGATGCCAACCCTGATGTGAGGCCTCCCTTCGCTGAAGTTGTAAGGATGCTTGAGAATGCAGAGACTGAAATTATGACGACTGTCCGCAAGGCCCGCTTCAGATGCTGTATGGCCCAACCAATGACTGCAGAGTGA 1233 0.4672 MLEGPKFTGIIGMNNNEYDLSQGFYHKLGEGSNMSIESYGSLQTSNGGGSVAMSVDNSSVGSNDSHTRILNHQGLRRVNNNYSVAASNNRGRVSHGLSDDALAQALMDSRYPTLGLENFEEWTIDLGKLNMGEAFAQGAFGKLYKGTYNGEDVAIKILERPENDLEKAQLMEQQFQQEVMMLATLKHTNIVRFIGGCRKPMVWCIVTEYAKGGSVRQFLTKRQNRQVPLKLAIKQALDVARGMAYVHGLGLIHRDLKSDNLLIFADKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSEIMTRCWDANPDVRPPFAEVVRMLENAETEIMTTVRKARFRCCMAQPMTAE* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0899 410 CDD STKc_MAP3K-like 136 383 - -
Vvi11g0899 410 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 73 386 - -
Vvi11g0899 410 SUPERFAMILY Protein kinase-like (PK-like) 110 383 IPR011009 -
Vvi11g0899 410 PRINTS Tyrosine kinase catalytic domain signature 245 263 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 PRINTS Tyrosine kinase catalytic domain signature 354 376 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 PRINTS Tyrosine kinase catalytic domain signature 291 301 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 PRINTS Tyrosine kinase catalytic domain signature 207 220 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 Pfam Protein tyrosine and serine/threonine kinase 130 383 IPR001245 GO:0004672|GO:0006468
Vvi11g0899 410 FunFam serine/threonine-protein kinase HT1 212 405 - -
Vvi11g0899 410 FunFam Serine/threonine-protein kinase isoform 1 119 211 - -
Vvi11g0899 410 ProSiteProfiles Protein kinase domain profile. 129 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0899 410 SMART serkin_6 129 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0899 410 Gene3D Transferase(Phosphotransferase) domain 1 212 406 - -
Vvi11g0899 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vvi11g0899 410 Gene3D Phosphorylase Kinase; domain 1 118 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0899 Vvi-Chr11 13479755 13484978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0899 1 410 MAP Kinase Kinase Kinase AT2G24360 78.177 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi11g0899 PK_Tyr_Ser-Thr 2.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0899 - - vvi:100263908 815.068