Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0893 ATGGGACTTGGCAAGACCATCCAGGTATTATCTTTCCTTGGAGCATTGCATTTCAGTAATATGTATAAACCAAGTGTTGTTATCTGCCCTGTTATACTCTTGCGACAATGGAAAAGGGAAGTAAAAAAAATGGTACCGAAGTTTTCATTGTTGCCTGTATTTGAAGCAAAATTTGCAGTTCCCATATCTGTTGGTGGCTATGCCAATGCTTCTCCATTACAAGTATCCACTACTTATAGCCTTACTGCAAAGCAGCGTTCTGTATATCGAGCATTTCTTGCAAGTTCAGAGGTGGAACAGATCTTTGATGGTAGTAGAAATTCTCTTTATGCCATTAATGTGATGCATAAGATATACAATCACCTTGATCTGCTTGAGCAAGAGCATGCTTACCAGAATCCAGATTATGGGAATTTTGAACATAGTGGAAAATGGAGAATTGATTTCCTGTTGGCAATGCAAGTTGTGATTTTAAAAAGCCAGAGTTGGGTTGGAATGCCTTTGCTGATGAAATTATACACTCAAACCCAGTGA 534 0.3858 MGLGKTIQVLSFLGALHFSNMYKPSVVICPVILLRQWKREVKKMVPKFSLLPVFEAKFAVPISVGGYANASPLQVSTTYSLTAKQRSVYRAFLASSEVEQIFDGSRNSLYAINVMHKIYNHLDLLEQEHAYQNPDYGNFEHSGKWRIDFLLAMQVVILKSQSWVGMPLLMKLYTQTQ* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0893 177 Gene3D - 1 83 IPR038718 -
Vvi11g0893 177 PANTHER SNF2/RAD54 FAMILY MEMBER 1 49 - -
Vvi11g0893 177 FunFam SNF2 family N-terminal domain-domain-containing protein 82 173 - -
Vvi11g0893 177 Pfam SNF2-related domain 1 47 IPR000330 GO:0005524|GO:0140658
Vvi11g0893 177 Gene3D - 84 148 - -
Vvi11g0893 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 59 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0893 Vvi-Chr11 13283207 13284258 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi11g0893 SNF2_N 1e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0893 K10841 - vvi:100253251 150.214