Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0884 ATGCTTGCCATTTACGGAGTCGCCACTGATAGTAGAGCGATAAACGAGCTCTCTGGAGTTACAGTAGGAGCCACGGTACTAGTAAATGTCCTCCTTGCAGGGCCAATAACAGGAGCTTCCATGAACCCTGCTAGGAGCATAGGCCCGGCACTTGTCTCAATGGAGTTTGACTGCCTTTGGATCTACATTGTGGCTCCCATTCTAGGAACCACTACAGCAACTGTAATCTACAGTCTTGTTAGGCTTCCCTTGCCTGAGAATCGGCTTTAA 270 0.4889 MLAIYGVATDSRAINELSGVTVGATVLVNVLLAGPITGASMNPARSIGPALVSMEFDCLWIYIVAPILGTTTATVIYSLVRLPLPENRL* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0884 89 Pfam Major intrinsic protein 1 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi11g0884 89 Gene3D Glycerol uptake facilitator protein. 1 84 IPR023271 -
Vvi11g0884 89 PRINTS Major intrinsic protein family signature 60 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi11g0884 89 PRINTS Major intrinsic protein family signature 23 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi11g0884 89 PANTHER AQUAPORIN NIP2-1 1 83 IPR034294 -
Vvi11g0884 89 SUPERFAMILY Aquaporin-like 1 85 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0884 Vvi-Chr11 12865608 12866147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0884 1 86 Major Intrinsic Protein MIP AT5G37810 55.056 2.99e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0884 K09874 - vvi:100854763 167.162