Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0883 ATGGGAAGATCTCCTTGTTGTGATGAGAGTGGCCTCAAGAAAGGGCCTTGGACTCCTGAGGAAGACCAGAAACTTGTCAAATATATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAATTCTGAATCTCCATTCTATCCTTGGCAACAAATGGTCAGCAATTGCTTCCCACCTTCCTGGACGGACCGACAATGAAATCAAGAATTTCCGGAACACCCATCTTAAGAAGAAGCTGATTCAGATGGGTTTCGACCCCATGACTCACCGGCCTCGAACTGATATGTTTGCAAGCTTGCCTCACCTCATAGCTCTGGTTAACCTGAAGGAGCTTATGGAGCACCAGTCGTGGGAAGAACATGCTGTGAGGCTACAAGCAGAAGCTGCTCAAATGGCTAGACTTCAGTACTTGCAGTATCTCCTTCAATCTCCAGCTTCAGTTGCGTCTGCCTCAAATAGCATCAGTGGCATCACAGACATGGAAGCATTTAATCTCTTGAGTTCACTCTCTTCAATCAAAGACACACAAGTTTTGAATTCTTCCCAGTTGGAAACTCCCACCCCATCTTCTTTTGGAGCTGGCCTTTATTCCATGCCCTTCTCTCGTTTGCCCAGTTTGGAAACCCCTTCCACCTTCGAAACACCTTCAAGCAAGGACATGGCTCAGTCTTCTAACTTCACAGTGTTCAGCCAAGGTGAAACCTTGCTTAACTCTCCATGGCTTCCTTCCGCTTCGTCGTCTTCTCATGCTGCCCCACCTGCAACCGAGACTTCCATCACCAACCCAGCAGACGCATCTAGTTCTCCAATCTATGAAGGGGCCCCTCTGTTTTGGCCTGATGGCGTCTTCATTGAAGACCCCATATTTCGTGAGATTGCTTAG 993 0.4733 MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSREEEETILNLHSILGNKWSAIASHLPGRTDNEIKNFRNTHLKKKLIQMGFDPMTHRPRTDMFASLPHLIALVNLKELMEHQSWEEHAVRLQAEAAQMARLQYLQYLLQSPASVASASNSISGITDMEAFNLLSSLSSIKDTQVLNSSQLETPTPSSFGAGLYSMPFSRLPSLETPSTFETPSSKDMAQSSNFTVFSQGETLLNSPWLPSASSSSHAAPPATETSITNPADASSSPIYEGAPLFWPDGVFIEDPIFREIA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0883 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi11g0883 330 CDD SANT 69 112 IPR001005 -
Vvi11g0883 330 CDD SANT 16 61 IPR001005 -
Vvi11g0883 330 SMART sant 13 63 IPR001005 -
Vvi11g0883 330 SMART sant 66 114 IPR001005 -
Vvi11g0883 330 Gene3D - 13 66 - -
Vvi11g0883 330 MobiDBLite consensus disorder prediction 283 303 - -
Vvi11g0883 330 SUPERFAMILY Homeodomain-like 11 106 IPR009057 -
Vvi11g0883 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi11g0883 330 FunFam MYB transcription factor 69 116 - -
Vvi11g0883 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi11g0883 330 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Vvi11g0883 330 Gene3D - 69 116 - -
Vvi11g0883 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi11g0883 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Vvi11g0883 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi11g0883 330 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0883 Vvi-Chr11 12860421 12861633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0883 1 322 MYB Transcription Factor Family AT1G34670 53.425 2.34e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0883 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0883 K09422 - vvi:100244550 640.188