Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0853 ATGCTCAAGAAACTGCCAGGGGTTCTCCATTTGGGCTTGGATTTCCTTGTGGTGGCTGATGGGACTCTTGATATCAGAGGATTCAGGCCTAAAGTTGCAGTCTTGGTGAGTTTTCTTCATCTTTCCTTTGAGAATATGGATTCGGTTCTCTTTCAAATCCAAGAGAAAGCCTTTAATTCTCCATCAGAGTCACCAGCTTTCCTTTCTCAGTCTCCGCCCCCTCCAGCCAATTTTCAGTCTGGTGATTACAATTTGAACAGCAAGGTTAGCCCAAGTATTTTGCTCATTATTATAATTCTAGCCATCATTTTCTTTGTTTCTGGTTTGCTTCACCTCCTTGTTAGATTTCTCCTGAGACAACCCAATAGAGAACCTGAAGATTTGGATAACGTGACTGCCCTTCAAGGGCAGTTACAGCAGCTATTTCATCTCCATGATGCCGGTGTTGATCAGTCTTTCATAGATACCCTTCCTGTCTTCCTTTACAAAGCCATTATAGGAGCCAAAAACCCATTTGACTGTGCTGTTTGTTTGTGTGAATTTGAGGCTGAGGACAAGCTTAGATTGTTACCAAAGTGTAGCCATGCCTTTCACATGGAGTGTATAGACACATGGCTTTTGTCTCACTCTACCTGTCCTCTCTGCAGAGGCAGCTTGCTTCCTGATTTCTCTCCAAATGATATCTGTTCACCCATTGTTCTTGTTCTTGAATCTGGGAGTGAGAGCTCAAGAGAGATTGTTTCAGACAGACATAGTGCCCTTGGCACAAACAATTCTGTTCTCAGGACAAATTCCCATCTGGGCTGTAATGACAATGAATTTGGGTCTATCCGCATTGACCCTTCATATAAATCATGTGAAATCGTGGCGAAGGAGGAGGCCCCTGCTGCGGCTCTACTGCTGGATTCAGGGGAAAAAGTTGTTCCCGTAAAGCTTGGGAAGTTCAAGAATGTTGATGGGGGTGGGGAGGGCAGCAGTACCAGTAATGTGGATGAAAGAAGGTGCTTCTCTATGGGGTCTTTTGAGTATGTAATGGATGAAAATTCTTCACTGCAAGTGCCCATCAGAACCCCGGTAAAGAAAACCTCCACTAAGAGGCGTTCTCTGCCATTAACACCCGGTGGCAGAATGGCCATGTCTGAATGTGATTGTGAATCAAGAAGAGAATTCAGTGGTTTTGATGCAGTTAAAGGCGGTGACACTCATATGGGTAGTAGTAGTAGTATTATTACAGGGAATAATGGAAACGGGAATGCTATAGGGAGGAGTAAAAGAGAGAGCTTCTCAATATCAAAGATCTGGCTCCGGGGGAAGAAGGAGAATCCAAGTTCAAGGACAGTGGATTCTTCAAGGCGGGCTTTCTCTTACCGATTTCCAGTGCATTCAAGTAGTGCTGCTGCTGATGATTTGAAGTTGAAGAATGTCAGTAGCAGTACTGGGAGGACTGTTTCTGAGCTTGAAATTGGGAGGTGGGAAAATGGAGGGAGTGAATTGGGTTGTGATGAGGAAATGCAGAGCTGTAACAGTTTGGATTCTCAAGCCAATCCGCCATCTTTTGCAAGGAGGACTTTGCTTTGGCTCATGGGAAGGCAAAACAAGGTTGTTCATTCATCCTTCCCACCCAATGTCTAA 1632 0.4455 MLKKLPGVLHLGLDFLVVADGTLDIRGFRPKVAVLVSFLHLSFENMDSVLFQIQEKAFNSPSESPAFLSQSPPPPANFQSGDYNLNSKVSPSILLIIIILAIIFFVSGLLHLLVRFLLRQPNREPEDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGAKNPFDCAVCLCEFEAEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRGSLLPDFSPNDICSPIVLVLESGSESSREIVSDRHSALGTNNSVLRTNSHLGCNDNEFGSIRIDPSYKSCEIVAKEEAPAAALLLDSGEKVVPVKLGKFKNVDGGGEGSSTSNVDERRCFSMGSFEYVMDENSSLQVPIRTPVKKTSTKRRSLPLTPGGRMAMSECDCESRREFSGFDAVKGGDTHMGSSSSIITGNNGNGNAIGRSKRESFSISKIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAADDLKLKNVSSSTGRTVSELEIGRWENGGSELGCDEEMQSCNSLDSQANPPSFARRTLLWLMGRQNKVVHSSFPPNV* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0853 543 SUPERFAMILY RING/U-box 153 226 - -
Vvi11g0853 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 86 434 - -
Vvi11g0853 543 MobiDBLite consensus disorder prediction 401 422 - -
Vvi11g0853 543 MobiDBLite consensus disorder prediction 359 380 - -
Vvi11g0853 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 221 IPR013083 -
Vvi11g0853 543 Pfam Ring finger domain 173 216 IPR001841 -
Vvi11g0853 543 CDD RING-H2_EL5-like 173 216 - -
Vvi11g0853 543 SMART ring_2 174 215 IPR001841 -
Vvi11g0853 543 FunFam RING-H2 finger protein ATL46 136 221 - -
Vvi11g0853 543 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Vvi11g0853 543 MobiDBLite consensus disorder prediction 395 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0853 Vvi-Chr11 10944913 10946544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0853 84 538 C3H Transcription Factor Family AT2G18650 48.211 1.33e-105 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0853 - - vvi:100250113 1047.73