Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0846 ATGACCTCCACCCAGAAGCCACACTTTTTCAGGATCATACACCCGTCGTTTCTTACACATGGATACCCTGGAATTCCTCAGATTTTTCTAAAAGAATATGGAAACAGTCTCTCAAATTTTGTGTTCCTCCACCTTCCCACTGGCGCTGAATGGCGAATAGAATTGTTGAAACTCCATGATGAGGTTTTGTTCGGCAGTGGATGGCAGCGATTTGCTGACTTCTATTCTATAAGATATGGGCATTTCTTACTGTTCAGATACGAAGGCAGTTCCCATTTCCATGTGCTTATATTTGATATGACCGCTTCTGAGATTGAATATCCATACGCTACTGCTCCCAATCACTACCACAACCATCATAAAGTTTCTGTTGAGAGTTTGGATGATTTCCCATCCTCCAAAACAGCAAACTATATGGACATGATCGATATTACCTCTAGTGAAGCAGTGTTCTACCCTAATGGAGCAAGCAGCTTGCCAAAAGTTGAGGACATTCAGGGTGATTTTCCAACCACCCACAAAACAAGGGAGATAACAAGAAACAATCCTTCTTTTAAACCTCATAACGCTTGCAGTTCCCACCACTATCATTCCTCCATCCCAATTTCTAGGGGTGGAGCTCTTGGAAGAGCTAAAGCTTTCAAATTCGAAAATCCTTTCTTCATTGTCACCATGCGACCATCTTATATTGGTAGTTGGTACGGTTTGAGTATACCATTGAGTTTTGTCAAGAGGCACTTCAAAACGGATAACAAGAAAACAACCCTTTCTGTTTCAGATGGAAGAACTTGGTCTGTCAAATACATTATTATGAAAAAATCCAAAGTAAAATTCTCCTCTGGTTGGACAAAGTTTGCACGAGATAACTCTTTGGAAGTAGGTGATGTCTGTGCCTTCGAGCTGATCAAATGCACCGGAACTTCACTCAAGGTTGTCATATTTCGGAACAATGAAGATGCAGGTCATGATCACCTGCAGCAGTGA 984 0.4146 MTSTQKPHFFRIIHPSFLTHGYPGIPQIFLKEYGNSLSNFVFLHLPTGAEWRIELLKLHDEVLFGSGWQRFADFYSIRYGHFLLFRYEGSSHFHVLIFDMTASEIEYPYATAPNHYHNHHKVSVESLDDFPSSKTANYMDMIDITSSEAVFYPNGASSLPKVEDIQGDFPTTHKTREITRNNPSFKPHNACSSHHYHSSIPISRGGALGRAKAFKFENPFFIVTMRPSYIGSWYGLSIPLSFVKRHFKTDNKKTTLSVSDGRTWSVKYIIMKKSKVKFSSGWTKFARDNSLEVGDVCAFELIKCTGTSLKVVIFRNNEDAGHDHLQQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0846 327 Gene3D - 203 319 IPR015300 -
Vvi11g0846 327 Pfam B3 DNA binding domain 221 316 IPR003340 GO:0003677
Vvi11g0846 327 Pfam B3 DNA binding domain 13 99 IPR003340 GO:0003677
Vvi11g0846 327 Gene3D - 1 102 IPR015300 -
Vvi11g0846 327 ProSiteProfiles B3 DNA-binding domain profile. 221 317 IPR003340 GO:0003677
Vvi11g0846 327 PANTHER B3 DOMAIN-CONTAINING 3 306 - -
Vvi11g0846 327 CDD B3_DNA 7 99 IPR003340 GO:0003677
Vvi11g0846 327 SMART B3_2 9 101 IPR003340 GO:0003677
Vvi11g0846 327 SMART B3_2 221 317 IPR003340 GO:0003677
Vvi11g0846 327 CDD B3_DNA 219 315 IPR003340 GO:0003677
Vvi11g0846 327 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Vvi11g0846 327 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Vvi11g0846 327 SUPERFAMILY DNA-binding pseudobarrel domain 217 318 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0846 Vvi-Chr11 10783951 10785220 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0846 6 323 B3 DNA Binding Superfamily AT3G18990 30.659 7.93e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi11g0846 B3 2.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0846 - - vvi:104880728 595.89