Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0843 ATGACTGACGCTCTGTCCCCACCTGCCGACTCTGACCGTCGCTTCTCTAGTCGACGCGTGTCGCCGGAAGACTTGTCGTTGAACGATTCTCTGCCTTTCTTCACTTTCTGCTCTGTCAGGGGCCACAACTCATTCTCTGCCAGTGGTTGCGCCGTGTGTCCCTCCAAGTTTGAGCCTCACGATCAGCTTCGACTGCTTTCGATCTGCTACCACGCATTCCATGCTCGATACATCGACGCGTGGCTGACATCCAATAAGACGTGTCCTCTATGTCGATCTCCGATATTCGCGACCGAAGCAGATTTTATGAAGGCCATACTCACGTCAATGAACGCTGGCGATAGCTTCCGAATCGAGCTCGGTTCTGTGAGTTGA 375 0.5333 MTDALSPPADSDRRFSSRRVSPEDLSLNDSLPFFTFCSVRGHNSFSASGCAVCPSKFEPHDQLRLLSICYHAFHARYIDAWLTSNKTCPLCRSPIFATEADFMKAILTSMNAGDSFRIELGSVS* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0843 124 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Vvi11g0843 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 99 - -
Vvi11g0843 124 MobiDBLite consensus disorder prediction 1 26 - -
Vvi11g0843 124 SUPERFAMILY RING/U-box 29 98 - -
Vvi11g0843 124 Pfam Ring finger domain 50 92 IPR001841 -
Vvi11g0843 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0843 Vvi-Chr11 10744451 10744825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0843 18 92 C3H Transcription Factor Family AT5G05810 48.000 4.27e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0843 K10663 - vvi:100255389 244.202