Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0834 ATGGTACTACAATGTGAATTTGTCAACAAAATTTCACAGGGAATTCCTCAGACTTTTCTAAGAGAATATGGAAACGGTCTCTCACATTTTGTGTACCTCCACCTTCCCACTGGCGCTGAATGGCGAGTAGAATTATTGAAACTCCATGGTGAGGTTTTGTTCAGCACTGGATGGCAGCAATTTGTTGAACATTATTCTATAGAATATGGGTATTTCTTACTATTCAGATATGAAGGCGATTCACATTTCCATGTGCTTGTATTTGACATGACCGCTTCTGAGATTGAATATCCATATGCTACTGATCCAACCATAGACCATGCCCACCACCAAGTTTCTCTTGAGATTTTGGATGATTTTCCACCCTCCCAAACAACAAACCATGTAGACATGATCGATATTACCTCTAATGAAGAAGAGTTCCACCCTAATGAGGCAAGCAGTTTGCTCAAGTCTGAGGAAATTGAGAGTGACTTTCCATCAACCCAGAAAACAAGCAAGACAAGAGGAAAGAATTCTTCTTTGAAACCTCATAACGCTTGCAGTTCCCACACATATCATTCTTCCATTCCAGATTGCAGGGATGGAGCTCTGCAAAGAGCTAAAGTTTTCAAACCCCAAAATCCTCTTCAAAGAGCTAAGGCTTTCAAACCCCAAAATCCTTTCTTCATTGTCACCATGGGATGGTCTTATGTCAATAGACACAATGTGACGGTACCATTCCGTTTTTTGAAGAGGCACTTCAGAACTGATAACACCAATACAACCCTTTCGGTTTCAGATGGAAGAGCTTGGTCTATCAAGTACATTATGGGAGCAAGAAGTGCGCATTTCTCTGCTGGTTGGAGAAAGTTTGCAGAAGATAATTCTTTGGAAGTAGGTGATGTTTGTGCCTTTGAGCTGGTAAAATGCACTGAAACTTCACTCAAGGTTGTCATATTTAGGAAAAAAGAAGATGGAAATGGCCGCCTGCAGCATTGA 981 0.4088 MVLQCEFVNKISQGIPQTFLREYGNGLSHFVYLHLPTGAEWRVELLKLHGEVLFSTGWQQFVEHYSIEYGYFLLFRYEGDSHFHVLVFDMTASEIEYPYATDPTIDHAHHQVSLEILDDFPPSQTTNHVDMIDITSNEEEFHPNEASSLLKSEEIESDFPSTQKTSKTRGKNSSLKPHNACSSHTYHSSIPDCRDGALQRAKVFKPQNPLQRAKAFKPQNPFFIVTMGWSYVNRHNVTVPFRFLKRHFRTDNTNTTLSVSDGRAWSIKYIMGARSAHFSAGWRKFAEDNSLEVGDVCAFELVKCTETSLKVVIFRKKEDGNGRLQH* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0834 326 SMART B3_2 223 317 IPR003340 GO:0003677
Vvi11g0834 326 SMART B3_2 7 91 IPR003340 GO:0003677
Vvi11g0834 326 ProSiteProfiles B3 DNA-binding domain profile. 222 317 IPR003340 GO:0003677
Vvi11g0834 326 MobiDBLite consensus disorder prediction 152 187 - -
Vvi11g0834 326 PANTHER B3 DOMAIN-CONTAINING 14 306 - -
Vvi11g0834 326 CDD B3_DNA 222 315 IPR003340 GO:0003677
Vvi11g0834 326 SUPERFAMILY DNA-binding pseudobarrel domain 4 90 IPR015300 -
Vvi11g0834 326 MobiDBLite consensus disorder prediction 161 187 - -
Vvi11g0834 326 ProSiteProfiles B3 DNA-binding domain profile. 1 91 IPR003340 GO:0003677
Vvi11g0834 326 Pfam B3 DNA binding domain 14 89 IPR003340 GO:0003677
Vvi11g0834 326 Pfam B3 DNA binding domain 223 316 IPR003340 GO:0003677
Vvi11g0834 326 Gene3D - 2 92 IPR015300 -
Vvi11g0834 326 Gene3D - 205 319 IPR015300 -
Vvi11g0834 326 SUPERFAMILY DNA-binding pseudobarrel domain 216 317 IPR015300 -
Vvi11g0834 326 CDD B3_DNA 15 89 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0834 Vvi-Chr11 10570680 10571857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0834 15 315 B3 DNA Binding Superfamily AT3G18990 30.312 3.03e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi11g0834 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0834 - - vvi:104880722 654.44