Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0804 ATGTTGCTCTTCCTCTTCCTCTTCCTTCTCTTTCTCTCCTCTGCCTCACCCTCTCTCTCCTACGAACCTCGCAACCATGAAGTCGAGGCTTTGATAAGTATCAGACTAGCTTTGAATGACCCCCATGGGGTTCTCAGCAACTGGGATGAAGACTCTGTAGACCCATGTAGCTGGGCCATGATCACATGCTCCACTGAAAATCTTGTCACTGGCTTAGGAGCTCCAAGCCAATCTCTGTCTGGAAGTTTGTCCGGGATGATTGGGAACCTCACCAATCTTAAACAAGTGTTATTGCAGAACAACAATATCTCCGGCCCGATTCCAACGGAGCTCGGTACTCTTCCGAGACTTCAAACGTTGGATCTCTCCAATAACCGCTTCGCAGGAGCTGTCCCAGCGTCTCTGGGTCAGTTGAGTAATCTTCATTACCTGAGGCTGAACAACAACAGCTTGTCTGGAGCATTTCCTGTGTCTTTAGCCAAAATCCCACAACTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCTGTGCCTAAATTTCCAGCCAGAACATTCAATGTTGTGGGAAACCCCTTGATTTGTGAGGCCAGCTCCACGGATGGTTGCTCTGGATCAGCCAATGCGGTCCCTCTTTCCATCTCTCTTAATTCATCAACTGGAAAACCGAAGTCCAAGAAAGTAGCAATTGCACTTGGGGTCAGCCTCAGTATTGTCTCTCTCATCCTCTTAGCACTTGGATATCTTATTTGCCAGAGAAGAAAACAAAGAAACCAGACCATCTTAAACATCAATGATCATCAAGAAGAGGGTCTAATAAGCCTGGGCAACCTAAGAAACTTCACTCTAAGAGAACTCCAACTTGCCACAGACAATTTCAGCACCAAGAACATACTTGGTAGCGGAGGTTTTGGTAATGTATATAAGGGTAAGCTAGGAGATGGGACTATGGTGGCAGTGAAACGGCTTAAAGATGTGACGGGAACTGCTGGAGAATCACAGTTCAGGACTGAATTGGAGATGATTAGCTTGGCAGTTCACCGGAATTTGCTTCGGCTGATTGGCTACTGTGCCACCCCAAATGAGAGGCTTTTGATTTACCCCTACATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGAAAACCAGCATTAGACTGGAACACAAGGAAGAGGATAGCAATTGGCGCTGCACGGGGTCTTCTATATCTACATGAGCAGTGCGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCTAATGTGCTCCTGGATGACTATTGTGAGGCTATTGTTGGTGACTTTGGCCTTGCAAAGCTCCTTGACCATTCTGATTCCCATGTTACCACTGCTGTCCGTGGAACTGTTGGGCACATTGCACCTGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTCTTTGGGTTTGGTATTCTCTTGTTGGAGCTCATAACTGGAATGAGAGCTCTTGAGTTTGGCAAAACGGTTAATCAGAAAGGAGCCATGCTTGAATGGGTGAAGAAAATACAGCAGGAGAAGAAAGTGGAAGTGCTGGTGGACAGAGAGCTAGGCTGCAACTACGACAGGATCGACGTGGGGGAGATGCTACAAGTGGCTTTGCTGTGCACTCAATATCTGCCTGCCCACCGCCCCAAAATGTCGGAAGTGGTCAGGATGCTGGAAGGCGATGGCCTAGCAGAGAAATGGGCAGCCTCCCACAACCACAACAACAATAATCCCACCCCCAACATCTCCCATTTCAACAGCCACAAAAGTACATGGCGCCCTACCACTGCATCAAAGCATGATAACATTGATCATGATGGTTCAAGCATGTTCGGCACCATGATGGACGAGGAGGACGATGATCATTCCTTGGATGCCCATGCCATGGAACTTTCTGGTCCAAGATAG 1923 0.4763 MLLFLFLFLLFLSSASPSLSYEPRNHEVEALISIRLALNDPHGVLSNWDEDSVDPCSWAMITCSTENLVTGLGAPSQSLSGSLSGMIGNLTNLKQVLLQNNNISGPIPTELGTLPRLQTLDLSNNRFAGAVPASLGQLSNLHYLRLNNNSLSGAFPVSLAKIPQLAFLDLSYNNLSGPVPKFPARTFNVVGNPLICEASSTDGCSGSANAVPLSISLNSSTGKPKSKKVAIALGVSLSIVSLILLALGYLICQRRKQRNQTILNINDHQEEGLISLGNLRNFTLRELQLATDNFSTKNILGSGGFGNVYKGKLGDGTMVAVKRLKDVTGTAGESQFRTELEMISLAVHRNLLRLIGYCATPNERLLIYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAIVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKTVNQKGAMLEWVKKIQQEKKVEVLVDRELGCNYDRIDVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHNNNNPTPNISHFNSHKSTWRPTTASKHDNIDHDGSSMFGTMMDEEDDDHSLDAHAMELSGPR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0804 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vvi11g0804 640 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vvi11g0804 640 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Vvi11g0804 640 SMART serkin_6 294 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0804 640 Pfam Protein tyrosine and serine/threonine kinase 296 563 IPR001245 GO:0004672|GO:0006468
Vvi11g0804 640 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Vvi11g0804 640 PRINTS Leucine-rich repeat signature 117 130 - -
Vvi11g0804 640 PRINTS Leucine-rich repeat signature 162 175 - -
Vvi11g0804 640 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Vvi11g0804 640 FunFam Somatic embryogenesis receptor-like kinase 1 371 583 - -
Vvi11g0804 640 SUPERFAMILY L domain-like 25 288 - -
Vvi11g0804 640 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0804 640 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Vvi11g0804 640 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Vvi11g0804 640 SUPERFAMILY Protein kinase-like (PK-like) 275 564 IPR011009 -
Vvi11g0804 640 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Vvi11g0804 640 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vvi11g0804 640 MobiDBLite consensus disorder prediction 576 598 - -
Vvi11g0804 640 MobiDBLite consensus disorder prediction 576 608 - -
Vvi11g0804 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0804 Vvi-Chr11 9794807 9799875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0804 1 640 Receptor kinase-like Gene Family AT5G16000 62.923 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi11g0804 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0804 - - vvi:100244999 1224.15