Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0797 ATGCCCGACCTTGGCAATCTCCTGAACTCATCGTCCCTAACCCTATCTCGCTGCCACAATCTGAAACCACTGAGCGACTCATGCGACTCGGGTGGGCCTCTGAGTCCTAACTCTGTCAATTGGGAACAGAGGCTGCGGTTCCCACTATCTCCCAAAGATGAGATTGAGTGCGAGAAGAGCGGGGTGGGGATTAGGGTTTTGAAGCGCACTCGAGGTGGTTCGCTGGATCGAAGCAAGAAGTTATCCAACGGTAAGAGTTTGGACGATCATGTGAAGGCTTGGGCTGACAAGAAAATGGAGTCTGGTGCGACTAAATCGCAGTGTTCGTTGCCGTTTATGTCCGGCGCTTCTAGATTGGATGAATGTCTTGTATGTCATAGTTTTATCTACCCTGGGGAGGAGGTTTCATGCACCATTGATGGTTGTCAAGGAGTTTATCACTTAAAATGTGCGAAGAATGAGCTTGGGTTCTCAACTAAGAGGAAGTTCAAGTGCCCCCAACACGCATGCTTTGTATGTAAGCGCAGATCATATTTGCAGTGTGTGCGATGCATAATAGCATCCCATCAAAAGTGTGCACCATGGCCAGAAGAGATGACCCTTTTAAGAAATCGCTCAGGTCAAGCTGTTTGTTGGAGGCATCCAACTGATTGGCGGCTGGACAAGAAGCATGCGGCCCCTACAAGTGACATAGAGGAAATATTCTCTCGCTTGCCTCTGCCGTATGATGAAGAGGAGTTCAAAATTGATTTAACCTGGAAAGACACAGTGGAGAATAAAATGGAGCCTACTCCATATGTGCACATAAGGCGCAATGTGTACCTAGTCAAGAAGAAGCGTGATGATGCTGCTGATGGTATTGGATGCACAAATTGTAGTTCGGTGTGCTCTGAGAATTGTGTGTGCAGGGTTCAATGCATAAGCTGCTCGAAGTCTTGCCACTGCTCAGAAAATTGCACAAACAGACCATTTCGCAAGGAAAAAAAGATTAAAATTGTCAAGACTGAACTTTGTGGTTGGGGAGTAGATGCAGCTGAATCGATTAATAAAGGCGATTTTGTTATTGAATATATTGGGGAAGTTATTGATGATGCTTTGTGTGAGCGAAGGCTTTGGGACATGAAAGATAGAGGTGATCAGAACTTTTACATGTGTGAAATTCGAAAGGACTTCACAATTGATGCAACTTTTAAGGGGAATGCATCACGTTTCTTAAACCACAGCTGCGATCCCAATTGTAAATTGGAAAAGTGGCAAGTTGAGGGGGAGACACGTGTGGGCGTGTTTGCTGCTCGATCTATAAAAGCTGGAGAACCATTAACATATGATTACAGATTTGTGCGATTTGGGCCGGAGGTAAAGTGCCATTGTGGTGCTCCAAGTTGTCATGGTTATCTTGGGACCAAAAAAAAGATTGCAAAGGTGGAACTCTGTTGGGGTTCAAAACGCAAGAGATCATCTTATTTTGCTCTTATTACTATATGA 1485 0.4498 MPDLGNLLNSSSLTLSRCHNLKPLSDSCDSGGPLSPNSVNWEQRLRFPLSPKDEIECEKSGVGIRVLKRTRGGSLDRSKKLSNGKSLDDHVKAWADKKMESGATKSQCSLPFMSGASRLDECLVCHSFIYPGEEVSCTIDGCQGVYHLKCAKNELGFSTKRKFKCPQHACFVCKRRSYLQCVRCIIASHQKCAPWPEEMTLLRNRSGQAVCWRHPTDWRLDKKHAAPTSDIEEIFSRLPLPYDEEEFKIDLTWKDTVENKMEPTPYVHIRRNVYLVKKKRDDAADGIGCTNCSSVCSENCVCRVQCISCSKSCHCSENCTNRPFRKEKKIKIVKTELCGWGVDAAESINKGDFVIEYIGEVIDDALCERRLWDMKDRGDQNFYMCEIRKDFTIDATFKGNASRFLNHSCDPNCKLEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVRFGPEVKCHCGAPSCHGYLGTKKKIAKVELCWGSKRKRSSYFALITI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0797 494 SMART PHD_3 121 169 IPR001965 -
Vvi11g0797 494 SMART PHD_3 170 215 IPR001965 -
Vvi11g0797 494 Pfam SET domain 339 444 IPR001214 GO:0005515
Vvi11g0797 494 SUPERFAMILY SET domain 238 457 IPR046341 -
Vvi11g0797 494 ProSiteProfiles AWS domain profile. 285 328 IPR006560 GO:0005634|GO:0042054
Vvi11g0797 494 Gene3D SET domain 239 486 IPR046341 -
Vvi11g0797 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 217 IPR013083 -
Vvi11g0797 494 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 494 IPR025787 -
Vvi11g0797 494 SMART PostSET_3 451 467 IPR003616 -
Vvi11g0797 494 PANTHER SET DOMAIN PROTEINS 56 485 - -
Vvi11g0797 494 FunFam Histone-lysine N-methyltransferase 242 477 - -
Vvi11g0797 494 ProSiteProfiles Post-SET domain profile. 451 467 IPR003616 -
Vvi11g0797 494 SMART shorttest3 284 329 IPR006560 GO:0005634|GO:0042054
Vvi11g0797 494 CDD SET_ASHR3-like 329 467 - -
Vvi11g0797 494 FunFam Histone-lysine N-methyltransferase 116 217 - -
Vvi11g0797 494 SMART set_7 328 451 IPR001214 GO:0005515
Vvi11g0797 494 ProSiteProfiles SET domain profile. 328 445 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0797 Vvi-Chr11 9538580 9561355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0797 309 466 C2H2 Transcription Factor Family AT2G23740 36.313 2.76e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi11g0797 SET 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0797 - - vvi:100241513 1030.39